Gene : Pp3c7_12170 P. patens v3.3
Defline:  (1 of 1) PTHR12169:SF5 - AFG1-LIKE ATPASE FAMILY PROTEIN Genomic Order:  648
Name:  ? Pp3c7_12170 Secondary Identifier:  ? PAC:32923566
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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10 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c7_12170 0.5kb upstream 0.5kb upstream 6549 true Chr07: 8244671-8251219 Physcomitrium patens
Pp3c7_12170 0.5kb upstream 0.5kb upstream 500 false Chr07: 8244671-8245170 Physcomitrium patens
Pp3c7_12170 0.5kb downstream 0.5kb downstream 6549 true Chr07: 8245171-8251719 Physcomitrium patens
Pp3c7_12170 0.5kb downstream 0.5kb downstream 500 false Chr07: 8251220-8251719 Physcomitrium patens
Pp3c7_12170 1.0kb upstream 1.0kb upstream 7049 true Chr07: 8244171-8251219 Physcomitrium patens
Pp3c7_12170 1.0kb upstream 1.0kb upstream 1000 false Chr07: 8244171-8245170 Physcomitrium patens
Pp3c7_12170 1.0kb downstream 1.0kb downstream 7049 true Chr07: 8245171-8252219 Physcomitrium patens
Pp3c7_12170 1.0kb downstream 1.0kb downstream 1000 false Chr07: 8251220-8252219 Physcomitrium patens
Pp3c7_12170 2.0kb upstream 2.0kb upstream 8049 true Chr07: 8243171-8251219 Physcomitrium patens
Pp3c7_12170 2.0kb upstream 2.0kb upstream 2000 false Chr07: 8243171-8245170 Physcomitrium patens
Pp3c7_12170 2.0kb downstream 2.0kb downstream 8049 true Chr07: 8245171-8253219 Physcomitrium patens
Pp3c7_12170 2.0kb downstream 2.0kb downstream 2000 false Chr07: 8251220-8253219 Physcomitrium patens
Pp3c7_12170 5.0kb upstream 5.0kb upstream 11049 true Chr07: 8240171-8251219 Physcomitrium patens
Pp3c7_12170 5.0kb upstream 5.0kb upstream 5000 false Chr07: 8240171-8245170 Physcomitrium patens
Pp3c7_12170 5.0kb downstream 5.0kb downstream 11049 true Chr07: 8245171-8256219 Physcomitrium patens
Pp3c7_12170 5.0kb downstream 5.0kb downstream 5000 false Chr07: 8251220-8256219 Physcomitrium patens
Pp3c7_12170 10.0kb upstream 10.0kb upstream 16049 true Chr07: 8235171-8251219 Physcomitrium patens
Pp3c7_12170 10.0kb upstream 10.0kb upstream 10000 false Chr07: 8235171-8245170 Physcomitrium patens
Pp3c7_12170 10.0kb downstream 10.0kb downstream 16049 true Chr07: 8245171-8261219 Physcomitrium patens
Pp3c7_12170 10.0kb downstream 10.0kb downstream 10000 false Chr07: 8251220-8261219 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121348170 5274 Embryophyte View MSA
123427307 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.79        
cufflinks 0.789        
cufflinks 0.916       High
cufflinks 0.473        
cufflinks 0.377       Low
cufflinks 0.215       Low
cufflinks 0.893       High
cufflinks 0.843        
cufflinks 0.203       Low
cufflinks 0.855       High
cufflinks 0.723        
cufflinks 0.602        
cufflinks 0.673        
cufflinks 0.429        
cufflinks 0.568        
cufflinks 0.46        
cufflinks 0.715        
cufflinks 0.29       Low
cufflinks 0.535        
cufflinks 0.866       High
cufflinks 0.748        
cufflinks 0.53        
cufflinks 0.653        
cufflinks 0.698        
cufflinks 0.77        
cufflinks 0.908       High
cufflinks 0.566        
cufflinks 0.415        
cufflinks 0.459        
cufflinks 0.414        

0 Strain