Gene : Pp3c7_3780 P. patens v3.3
Defline:  (1 of 2) PTHR13068:SF13 - MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN Genomic Order:  207
Name:  ? Pp3c7_3780 Secondary Identifier:  ? PAC:32923166
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c7_3780 0.5kb upstream 0.5kb upstream 4694 true Chr07: 2330685-2335378 Physcomitrium patens
Pp3c7_3780 0.5kb upstream 0.5kb upstream 500 false Chr07: 2330685-2331184 Physcomitrium patens
Pp3c7_3780 0.5kb downstream 0.5kb downstream 4694 true Chr07: 2331185-2335878 Physcomitrium patens
Pp3c7_3780 0.5kb downstream 0.5kb downstream 500 false Chr07: 2335379-2335878 Physcomitrium patens
Pp3c7_3780 1.0kb upstream 1.0kb upstream 5194 true Chr07: 2330185-2335378 Physcomitrium patens
Pp3c7_3780 1.0kb upstream 1.0kb upstream 1000 false Chr07: 2330185-2331184 Physcomitrium patens
Pp3c7_3780 1.0kb downstream 1.0kb downstream 5194 true Chr07: 2331185-2336378 Physcomitrium patens
Pp3c7_3780 1.0kb downstream 1.0kb downstream 1000 false Chr07: 2335379-2336378 Physcomitrium patens
Pp3c7_3780 2.0kb upstream 2.0kb upstream 6194 true Chr07: 2329185-2335378 Physcomitrium patens
Pp3c7_3780 2.0kb upstream 2.0kb upstream 2000 false Chr07: 2329185-2331184 Physcomitrium patens
Pp3c7_3780 2.0kb downstream 2.0kb downstream 6194 true Chr07: 2331185-2337378 Physcomitrium patens
Pp3c7_3780 2.0kb downstream 2.0kb downstream 2000 false Chr07: 2335379-2337378 Physcomitrium patens
Pp3c7_3780 5.0kb upstream 5.0kb upstream 9194 true Chr07: 2326185-2335378 Physcomitrium patens
Pp3c7_3780 5.0kb upstream 5.0kb upstream 5000 false Chr07: 2326185-2331184 Physcomitrium patens
Pp3c7_3780 5.0kb downstream 5.0kb downstream 9194 true Chr07: 2331185-2340378 Physcomitrium patens
Pp3c7_3780 5.0kb downstream 5.0kb downstream 5000 false Chr07: 2335379-2340378 Physcomitrium patens
Pp3c7_3780 10.0kb upstream 10.0kb upstream 14194 true Chr07: 2321185-2335378 Physcomitrium patens
Pp3c7_3780 10.0kb upstream 10.0kb upstream 10000 false Chr07: 2321185-2331184 Physcomitrium patens
Pp3c7_3780 10.0kb downstream 10.0kb downstream 14194 true Chr07: 2331185-2345378 Physcomitrium patens
Pp3c7_3780 10.0kb downstream 10.0kb downstream 10000 false Chr07: 2335379-2345378 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121345820 5274 Embryophyte View MSA
123427998 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.154        
cufflinks 1.163       Low
cufflinks 4.23        
cufflinks 3.534        
cufflinks 5.108       High
cufflinks 0.711       Low
cufflinks 3.022        
cufflinks 3.453        
cufflinks 3.297        
cufflinks 3.675        
cufflinks 0.69       Low
cufflinks 2.453        
cufflinks 2.974        
cufflinks 3.125        
cufflinks 4.195        
cufflinks 3.7        
cufflinks 2.331        
cufflinks 3.803        
cufflinks 2.947        
cufflinks 2.71        
cufflinks 2.814        
cufflinks 2.611        
cufflinks 3.22        
cufflinks 3.699        
cufflinks 3.215        
cufflinks 3.788        
cufflinks 4.159        
cufflinks 1.835        
cufflinks 3.496        
cufflinks 2.817        

0 Strain