Gene : Pp3c7_4500 P. patens v3.3
Defline:  (1 of 1) PF04192 - Utp21 specific WD40 associated putative domain (Utp21) Genomic Order:  254
Name:  ? Pp3c7_4500 Secondary Identifier:  ? PAC:32923925
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c7_4500 0.5kb upstream 0.5kb upstream 3811 true Chr07: 2878602-2882412 Physcomitrium patens
Pp3c7_4500 0.5kb upstream 0.5kb upstream 500 false Chr07: 2881913-2882412 Physcomitrium patens
Pp3c7_4500 0.5kb downstream 0.5kb downstream 3811 true Chr07: 2878102-2881912 Physcomitrium patens
Pp3c7_4500 0.5kb downstream 0.5kb downstream 500 false Chr07: 2878102-2878601 Physcomitrium patens
Pp3c7_4500 1.0kb upstream 1.0kb upstream 4311 true Chr07: 2878602-2882912 Physcomitrium patens
Pp3c7_4500 1.0kb upstream 1.0kb upstream 1000 false Chr07: 2881913-2882912 Physcomitrium patens
Pp3c7_4500 1.0kb downstream 1.0kb downstream 4311 true Chr07: 2877602-2881912 Physcomitrium patens
Pp3c7_4500 1.0kb downstream 1.0kb downstream 1000 false Chr07: 2877602-2878601 Physcomitrium patens
Pp3c7_4500 2.0kb upstream 2.0kb upstream 5311 true Chr07: 2878602-2883912 Physcomitrium patens
Pp3c7_4500 2.0kb upstream 2.0kb upstream 2000 false Chr07: 2881913-2883912 Physcomitrium patens
Pp3c7_4500 2.0kb downstream 2.0kb downstream 5311 true Chr07: 2876602-2881912 Physcomitrium patens
Pp3c7_4500 2.0kb downstream 2.0kb downstream 2000 false Chr07: 2876602-2878601 Physcomitrium patens
Pp3c7_4500 5.0kb upstream 5.0kb upstream 8311 true Chr07: 2878602-2886912 Physcomitrium patens
Pp3c7_4500 5.0kb upstream 5.0kb upstream 5000 false Chr07: 2881913-2886912 Physcomitrium patens
Pp3c7_4500 5.0kb downstream 5.0kb downstream 8311 true Chr07: 2873602-2881912 Physcomitrium patens
Pp3c7_4500 5.0kb downstream 5.0kb downstream 5000 false Chr07: 2873602-2878601 Physcomitrium patens
Pp3c7_4500 10.0kb upstream 10.0kb upstream 13311 true Chr07: 2878602-2891912 Physcomitrium patens
Pp3c7_4500 10.0kb upstream 10.0kb upstream 10000 false Chr07: 2881913-2891912 Physcomitrium patens
Pp3c7_4500 10.0kb downstream 10.0kb downstream 13311 true Chr07: 2868602-2881912 Physcomitrium patens
Pp3c7_4500 10.0kb downstream 10.0kb downstream 10000 false Chr07: 2868602-2878601 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121346831 5274 Embryophyte View MSA
123424252 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.527        
cufflinks 0.942       Low
cufflinks 1.977        
cufflinks 3.805       High
cufflinks 1.547       Low
cufflinks 3.308        
cufflinks 3.102        
cufflinks 3.142        
cufflinks 3.875       High
cufflinks 1.858        
cufflinks 3.251        
cufflinks 3.179        
cufflinks 2.76        
cufflinks 2.273        
cufflinks 2.226        
cufflinks 1.16       Low
cufflinks 3.704        
cufflinks 0.726       Low
cufflinks 3.263        
cufflinks 2.649        
cufflinks 2.842        
cufflinks 1.849        
cufflinks 3.136        
cufflinks 2.749        
cufflinks 3.686        
cufflinks 2.323        
cufflinks 1.638        
cufflinks 2.721        
cufflinks 3.343        
cufflinks 1.755        

0 Strain