Gene : Pp3c7_5960 P. patens v3.3
Defline:  (1 of 2) PTHR12100 - SEC10 Genomic Order:  341
Name:  ? Pp3c7_5960 Secondary Identifier:  ? PAC:32926299
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c7_5960 0.5kb upstream 0.5kb upstream 11412 true Chr07: 3768489-3779900 Physcomitrium patens
Pp3c7_5960 0.5kb upstream 0.5kb upstream 500 false Chr07: 3768489-3768988 Physcomitrium patens
Pp3c7_5960 0.5kb downstream 0.5kb downstream 11412 true Chr07: 3768989-3780400 Physcomitrium patens
Pp3c7_5960 0.5kb downstream 0.5kb downstream 500 false Chr07: 3779901-3780400 Physcomitrium patens
Pp3c7_5960 1.0kb upstream 1.0kb upstream 11912 true Chr07: 3767989-3779900 Physcomitrium patens
Pp3c7_5960 1.0kb upstream 1.0kb upstream 1000 false Chr07: 3767989-3768988 Physcomitrium patens
Pp3c7_5960 1.0kb downstream 1.0kb downstream 11912 true Chr07: 3768989-3780900 Physcomitrium patens
Pp3c7_5960 1.0kb downstream 1.0kb downstream 1000 false Chr07: 3779901-3780900 Physcomitrium patens
Pp3c7_5960 2.0kb upstream 2.0kb upstream 12912 true Chr07: 3766989-3779900 Physcomitrium patens
Pp3c7_5960 2.0kb upstream 2.0kb upstream 2000 false Chr07: 3766989-3768988 Physcomitrium patens
Pp3c7_5960 2.0kb downstream 2.0kb downstream 12912 true Chr07: 3768989-3781900 Physcomitrium patens
Pp3c7_5960 2.0kb downstream 2.0kb downstream 2000 false Chr07: 3779901-3781900 Physcomitrium patens
Pp3c7_5960 5.0kb upstream 5.0kb upstream 15912 true Chr07: 3763989-3779900 Physcomitrium patens
Pp3c7_5960 5.0kb upstream 5.0kb upstream 5000 false Chr07: 3763989-3768988 Physcomitrium patens
Pp3c7_5960 5.0kb downstream 5.0kb downstream 15912 true Chr07: 3768989-3784900 Physcomitrium patens
Pp3c7_5960 5.0kb downstream 5.0kb downstream 5000 false Chr07: 3779901-3784900 Physcomitrium patens
Pp3c7_5960 10.0kb upstream 10.0kb upstream 20912 true Chr07: 3758989-3779900 Physcomitrium patens
Pp3c7_5960 10.0kb upstream 10.0kb upstream 10000 false Chr07: 3758989-3768988 Physcomitrium patens
Pp3c7_5960 10.0kb downstream 10.0kb downstream 20912 true Chr07: 3768989-3789900 Physcomitrium patens
Pp3c7_5960 10.0kb downstream 10.0kb downstream 10000 false Chr07: 3779901-3789900 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121350027 5274 Embryophyte View MSA
123428595 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.592       Low
cufflinks 0.892        
cufflinks 0.866        
cufflinks 0.974        
cufflinks 0.533       Low
cufflinks 0.6       Low
cufflinks 0.942        
cufflinks 0.654        
cufflinks 0.595       Low
cufflinks 0.778        
cufflinks 0.911        
cufflinks 0.822        
cufflinks 0.733        
cufflinks 0.928        
cufflinks 0.769        
cufflinks 0.841        
cufflinks 0.758        
cufflinks 0.478       Low
cufflinks 0.521       Low
cufflinks 0.819        
cufflinks 0.696        
cufflinks 1.033       High
cufflinks 0.676        
cufflinks 0.879        
cufflinks 0.641        
cufflinks 0.952        
cufflinks 1.323       High
cufflinks 1.221       High
cufflinks 0.928        
cufflinks 1.299       High

0 Strain