Gene : Pp3c7_6480 P. patens v3.3
Defline:  (1 of 1) PTHR12640 - RIBOPHORIN II Genomic Order:  367
Name:  ? Pp3c7_6480 Secondary Identifier:  ? PAC:32925193
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ppatens MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS Physcomitrium patens pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c7_6480 0.5kb upstream 0.5kb upstream 2340 true Chr07: 4012631-4014970 Physcomitrium patens
Pp3c7_6480 0.5kb upstream 0.5kb upstream 500 false Chr07: 4012631-4013130 Physcomitrium patens
Pp3c7_6480 0.5kb downstream 0.5kb downstream 2340 true Chr07: 4013131-4015470 Physcomitrium patens
Pp3c7_6480 0.5kb downstream 0.5kb downstream 500 false Chr07: 4014971-4015470 Physcomitrium patens
Pp3c7_6480 1.0kb upstream 1.0kb upstream 2840 true Chr07: 4012131-4014970 Physcomitrium patens
Pp3c7_6480 1.0kb upstream 1.0kb upstream 1000 false Chr07: 4012131-4013130 Physcomitrium patens
Pp3c7_6480 1.0kb downstream 1.0kb downstream 2840 true Chr07: 4013131-4015970 Physcomitrium patens
Pp3c7_6480 1.0kb downstream 1.0kb downstream 1000 false Chr07: 4014971-4015970 Physcomitrium patens
Pp3c7_6480 2.0kb upstream 2.0kb upstream 3840 true Chr07: 4011131-4014970 Physcomitrium patens
Pp3c7_6480 2.0kb upstream 2.0kb upstream 2000 false Chr07: 4011131-4013130 Physcomitrium patens
Pp3c7_6480 2.0kb downstream 2.0kb downstream 3840 true Chr07: 4013131-4016970 Physcomitrium patens
Pp3c7_6480 2.0kb downstream 2.0kb downstream 2000 false Chr07: 4014971-4016970 Physcomitrium patens
Pp3c7_6480 5.0kb upstream 5.0kb upstream 6840 true Chr07: 4008131-4014970 Physcomitrium patens
Pp3c7_6480 5.0kb upstream 5.0kb upstream 5000 false Chr07: 4008131-4013130 Physcomitrium patens
Pp3c7_6480 5.0kb downstream 5.0kb downstream 6840 true Chr07: 4013131-4019970 Physcomitrium patens
Pp3c7_6480 5.0kb downstream 5.0kb downstream 5000 false Chr07: 4014971-4019970 Physcomitrium patens
Pp3c7_6480 10.0kb upstream 10.0kb upstream 11840 true Chr07: 4003131-4014970 Physcomitrium patens
Pp3c7_6480 10.0kb upstream 10.0kb upstream 10000 false Chr07: 4003131-4013130 Physcomitrium patens
Pp3c7_6480 10.0kb downstream 10.0kb downstream 11840 true Chr07: 4013131-4024970 Physcomitrium patens
Pp3c7_6480 10.0kb downstream 10.0kb downstream 10000 false Chr07: 4014971-4024970 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121328299 5274 Embryophyte Singleton cluster - no MSA
123427348 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.621        
cufflinks 14.959        
cufflinks 12.757        
cufflinks 14.686        
cufflinks 7.483       Low
cufflinks 10.047        
cufflinks 21.768     High  
cufflinks 14.726        
cufflinks 10.297        
cufflinks 9.467       Low
cufflinks 9.814       Low
cufflinks 18.487        
cufflinks 10.895        
cufflinks 8.188       Low
cufflinks 21.964     High  
cufflinks 34.316     High High
cufflinks 21.135     High  
cufflinks 17.951        
cufflinks 12.111        
cufflinks 11.055        
cufflinks 22.65     High  
cufflinks 13.864        
cufflinks 17.75        
cufflinks 39.358     High High
cufflinks 22.733     High  
cufflinks 15.976        
cufflinks 15.732        
cufflinks 31.928     High High
cufflinks 7.587       Low
cufflinks 16.583        

0 Strain