Gene : Pp3c8_11880 P. patens v3.3
Defline:  (1 of 1) PTHR12357:SF32 - YTH FAMILY PROTEIN Genomic Order:  483
Name:  ? Pp3c8_11880 Secondary Identifier:  ? PAC:32965557
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c8_11880 0.5kb upstream 0.5kb upstream 7867 true Chr08: 7610137-7618003 Physcomitrium patens
Pp3c8_11880 0.5kb upstream 0.5kb upstream 500 false Chr08: 7617504-7618003 Physcomitrium patens
Pp3c8_11880 0.5kb downstream 0.5kb downstream 7867 true Chr08: 7609637-7617503 Physcomitrium patens
Pp3c8_11880 0.5kb downstream 0.5kb downstream 500 false Chr08: 7609637-7610136 Physcomitrium patens
Pp3c8_11880 1.0kb upstream 1.0kb upstream 8367 true Chr08: 7610137-7618503 Physcomitrium patens
Pp3c8_11880 1.0kb upstream 1.0kb upstream 1000 false Chr08: 7617504-7618503 Physcomitrium patens
Pp3c8_11880 1.0kb downstream 1.0kb downstream 8367 true Chr08: 7609137-7617503 Physcomitrium patens
Pp3c8_11880 1.0kb downstream 1.0kb downstream 1000 false Chr08: 7609137-7610136 Physcomitrium patens
Pp3c8_11880 2.0kb upstream 2.0kb upstream 9367 true Chr08: 7610137-7619503 Physcomitrium patens
Pp3c8_11880 2.0kb upstream 2.0kb upstream 2000 false Chr08: 7617504-7619503 Physcomitrium patens
Pp3c8_11880 2.0kb downstream 2.0kb downstream 9367 true Chr08: 7608137-7617503 Physcomitrium patens
Pp3c8_11880 2.0kb downstream 2.0kb downstream 2000 false Chr08: 7608137-7610136 Physcomitrium patens
Pp3c8_11880 5.0kb upstream 5.0kb upstream 12367 true Chr08: 7610137-7622503 Physcomitrium patens
Pp3c8_11880 5.0kb upstream 5.0kb upstream 5000 false Chr08: 7617504-7622503 Physcomitrium patens
Pp3c8_11880 5.0kb downstream 5.0kb downstream 12367 true Chr08: 7605137-7617503 Physcomitrium patens
Pp3c8_11880 5.0kb downstream 5.0kb downstream 5000 false Chr08: 7605137-7610136 Physcomitrium patens
Pp3c8_11880 10.0kb upstream 10.0kb upstream 17367 true Chr08: 7610137-7627503 Physcomitrium patens
Pp3c8_11880 10.0kb upstream 10.0kb upstream 10000 false Chr08: 7617504-7627503 Physcomitrium patens
Pp3c8_11880 10.0kb downstream 10.0kb downstream 17367 true Chr08: 7600137-7617503 Physcomitrium patens
Pp3c8_11880 10.0kb downstream 10.0kb downstream 10000 false Chr08: 7600137-7610136 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121348539 5274 Embryophyte View MSA
123380904 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.614        
cufflinks 0.487        
cufflinks 0.375       Low
cufflinks 0.482        
cufflinks 0.533        
cufflinks 1.453       High
cufflinks 0.395       Low
cufflinks 0.711        
cufflinks 0.862        
cufflinks 0.611        
cufflinks 0.461        
cufflinks 0.863        
cufflinks 0.727        
cufflinks 0.571        
cufflinks 0.427       Low
cufflinks 0.603        
cufflinks 0.58        
cufflinks 0.656        
cufflinks 0.407       Low
cufflinks 0.379       Low
cufflinks 0.748        
cufflinks 0.44        
cufflinks 0.676        
cufflinks 0.888       High
cufflinks 0.924       High
cufflinks 0.426       Low
cufflinks 0.543        
cufflinks 0.549        
cufflinks 1.074       High
cufflinks 0.695        

0 Strain