Gene : Pp3c8_21920 P. patens v3.3
Defline:  (1 of 26) PF00651//PF03000 - BTB/POZ domain (BTB) // NPH3 family (NPH3) Genomic Order:  1007
Name:  ? Pp3c8_21920 Secondary Identifier:  ? PAC:32963422
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c8_21920 0.5kb upstream 0.5kb upstream 4995 true Chr08: 15125009-15130003 Physcomitrium patens
Pp3c8_21920 0.5kb upstream 0.5kb upstream 500 false Chr08: 15125009-15125508 Physcomitrium patens
Pp3c8_21920 0.5kb downstream 0.5kb downstream 4995 true Chr08: 15125509-15130503 Physcomitrium patens
Pp3c8_21920 0.5kb downstream 0.5kb downstream 500 false Chr08: 15130004-15130503 Physcomitrium patens
Pp3c8_21920 1.0kb upstream 1.0kb upstream 5495 true Chr08: 15124509-15130003 Physcomitrium patens
Pp3c8_21920 1.0kb upstream 1.0kb upstream 1000 false Chr08: 15124509-15125508 Physcomitrium patens
Pp3c8_21920 1.0kb downstream 1.0kb downstream 5495 true Chr08: 15125509-15131003 Physcomitrium patens
Pp3c8_21920 1.0kb downstream 1.0kb downstream 1000 false Chr08: 15130004-15131003 Physcomitrium patens
Pp3c8_21920 2.0kb upstream 2.0kb upstream 6495 true Chr08: 15123509-15130003 Physcomitrium patens
Pp3c8_21920 2.0kb upstream 2.0kb upstream 2000 false Chr08: 15123509-15125508 Physcomitrium patens
Pp3c8_21920 2.0kb downstream 2.0kb downstream 6495 true Chr08: 15125509-15132003 Physcomitrium patens
Pp3c8_21920 2.0kb downstream 2.0kb downstream 2000 false Chr08: 15130004-15132003 Physcomitrium patens
Pp3c8_21920 5.0kb upstream 5.0kb upstream 9495 true Chr08: 15120509-15130003 Physcomitrium patens
Pp3c8_21920 5.0kb upstream 5.0kb upstream 5000 false Chr08: 15120509-15125508 Physcomitrium patens
Pp3c8_21920 5.0kb downstream 5.0kb downstream 9495 true Chr08: 15125509-15135003 Physcomitrium patens
Pp3c8_21920 5.0kb downstream 5.0kb downstream 5000 false Chr08: 15130004-15135003 Physcomitrium patens
Pp3c8_21920 10.0kb upstream 10.0kb upstream 14495 true Chr08: 15115509-15130003 Physcomitrium patens
Pp3c8_21920 10.0kb upstream 10.0kb upstream 10000 false Chr08: 15115509-15125508 Physcomitrium patens
Pp3c8_21920 10.0kb downstream 10.0kb downstream 14495 true Chr08: 15125509-15140003 Physcomitrium patens
Pp3c8_21920 10.0kb downstream 10.0kb downstream 10000 false Chr08: 15130004-15140003 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121343550 5274 Embryophyte View MSA
123379756 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.036     Low  
cufflinks 0.003     Low Low
cufflinks 0.036     Low  
cufflinks 0.185        
cufflinks 0.147        
cufflinks 0.098        
cufflinks 0.258       High
cufflinks 0.105        
cufflinks 0.379       High
cufflinks 0.066        
cufflinks 0.016     Low Low
cufflinks 0.048     Low  
cufflinks 0.143        
cufflinks 0.03     Low  
cufflinks 0.015     Low Low
cufflinks 0.031     Low  
cufflinks 0.025     Low  
cufflinks 0.136        
cufflinks 0.028     Low  
cufflinks 0.185        
cufflinks 0.395       High
cufflinks 0.023     Low  
cufflinks 0.207        
cufflinks 0.162        
cufflinks 0.055     Low  
cufflinks 0.034     Low  
cufflinks 0.247       High
cufflinks 0.047     Low  
cufflinks 0.033     Low  
cufflinks 0.047     Low  

0 Strain