Gene : Pp3c8_22270 P. patens v3.3
Defline:  (1 of 1) KOG0265//KOG0288//KOG0316 - U5 snRNP-specific protein-like factor and related proteins // WD40 repeat protein TipD // Conserved WD40 repeat-containing protein Genomic Order:  1019
Name:  ? Pp3c8_22270 Secondary Identifier:  ? PAC:32965798
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c8_22270 0.5kb upstream 0.5kb upstream 9195 true Chr08: 15320803-15329997 Physcomitrium patens
Pp3c8_22270 0.5kb upstream 0.5kb upstream 500 false Chr08: 15320803-15321302 Physcomitrium patens
Pp3c8_22270 0.5kb downstream 0.5kb downstream 9195 true Chr08: 15321303-15330497 Physcomitrium patens
Pp3c8_22270 0.5kb downstream 0.5kb downstream 500 false Chr08: 15329998-15330497 Physcomitrium patens
Pp3c8_22270 1.0kb upstream 1.0kb upstream 9695 true Chr08: 15320303-15329997 Physcomitrium patens
Pp3c8_22270 1.0kb upstream 1.0kb upstream 1000 false Chr08: 15320303-15321302 Physcomitrium patens
Pp3c8_22270 1.0kb downstream 1.0kb downstream 9695 true Chr08: 15321303-15330997 Physcomitrium patens
Pp3c8_22270 1.0kb downstream 1.0kb downstream 1000 false Chr08: 15329998-15330997 Physcomitrium patens
Pp3c8_22270 2.0kb upstream 2.0kb upstream 10695 true Chr08: 15319303-15329997 Physcomitrium patens
Pp3c8_22270 2.0kb upstream 2.0kb upstream 2000 false Chr08: 15319303-15321302 Physcomitrium patens
Pp3c8_22270 2.0kb downstream 2.0kb downstream 10695 true Chr08: 15321303-15331997 Physcomitrium patens
Pp3c8_22270 2.0kb downstream 2.0kb downstream 2000 false Chr08: 15329998-15331997 Physcomitrium patens
Pp3c8_22270 5.0kb upstream 5.0kb upstream 13695 true Chr08: 15316303-15329997 Physcomitrium patens
Pp3c8_22270 5.0kb upstream 5.0kb upstream 5000 false Chr08: 15316303-15321302 Physcomitrium patens
Pp3c8_22270 5.0kb downstream 5.0kb downstream 13695 true Chr08: 15321303-15334997 Physcomitrium patens
Pp3c8_22270 5.0kb downstream 5.0kb downstream 5000 false Chr08: 15329998-15334997 Physcomitrium patens
Pp3c8_22270 10.0kb upstream 10.0kb upstream 18695 true Chr08: 15311303-15329997 Physcomitrium patens
Pp3c8_22270 10.0kb upstream 10.0kb upstream 10000 false Chr08: 15311303-15321302 Physcomitrium patens
Pp3c8_22270 10.0kb downstream 10.0kb downstream 18695 true Chr08: 15321303-15339997 Physcomitrium patens
Pp3c8_22270 10.0kb downstream 10.0kb downstream 10000 false Chr08: 15329998-15339997 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121342688 5274 Embryophyte View MSA
123427190 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.885        
cufflinks 1.224        
cufflinks 0.469        
cufflinks 2.746       High
cufflinks 0.489        
cufflinks 0.594        
cufflinks 0.385       Low
cufflinks 0.617        
cufflinks 3.01       High
cufflinks 0.354       Low
cufflinks 1.387        
cufflinks 1.651       High
cufflinks 1.585       High
cufflinks 0.322       Low
cufflinks 0.671        
cufflinks 0.638        
cufflinks 0.431        
cufflinks 0.281       Low
cufflinks 2.101       High
cufflinks 0.957        
cufflinks 0.986        
cufflinks 0.609        
cufflinks 1.736       High
cufflinks 0.582        
cufflinks 1.566       High
cufflinks 0.664        
cufflinks 0.865        
cufflinks 0.414       Low
cufflinks 1.173        
cufflinks 0.454        

0 Strain