Gene : Pp3c8_22330 P. patens v3.3
Defline:  (1 of 2) PF14493 - Helix-turn-helix domain (HTH_40) Genomic Order:  1022
Name:  ? Pp3c8_22330 Secondary Identifier:  ? PAC:32966281
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c8_22330 0.5kb upstream 0.5kb upstream 3467 true Chr08: 15349509-15352975 Physcomitrium patens
Pp3c8_22330 0.5kb upstream 0.5kb upstream 500 false Chr08: 15349509-15350008 Physcomitrium patens
Pp3c8_22330 0.5kb downstream 0.5kb downstream 3467 true Chr08: 15350009-15353475 Physcomitrium patens
Pp3c8_22330 0.5kb downstream 0.5kb downstream 500 false Chr08: 15352976-15353475 Physcomitrium patens
Pp3c8_22330 1.0kb upstream 1.0kb upstream 3967 true Chr08: 15349009-15352975 Physcomitrium patens
Pp3c8_22330 1.0kb upstream 1.0kb upstream 1000 false Chr08: 15349009-15350008 Physcomitrium patens
Pp3c8_22330 1.0kb downstream 1.0kb downstream 3967 true Chr08: 15350009-15353975 Physcomitrium patens
Pp3c8_22330 1.0kb downstream 1.0kb downstream 1000 false Chr08: 15352976-15353975 Physcomitrium patens
Pp3c8_22330 2.0kb upstream 2.0kb upstream 4967 true Chr08: 15348009-15352975 Physcomitrium patens
Pp3c8_22330 2.0kb upstream 2.0kb upstream 2000 false Chr08: 15348009-15350008 Physcomitrium patens
Pp3c8_22330 2.0kb downstream 2.0kb downstream 4967 true Chr08: 15350009-15354975 Physcomitrium patens
Pp3c8_22330 2.0kb downstream 2.0kb downstream 2000 false Chr08: 15352976-15354975 Physcomitrium patens
Pp3c8_22330 5.0kb upstream 5.0kb upstream 7967 true Chr08: 15345009-15352975 Physcomitrium patens
Pp3c8_22330 5.0kb upstream 5.0kb upstream 5000 false Chr08: 15345009-15350008 Physcomitrium patens
Pp3c8_22330 5.0kb downstream 5.0kb downstream 7967 true Chr08: 15350009-15357975 Physcomitrium patens
Pp3c8_22330 5.0kb downstream 5.0kb downstream 5000 false Chr08: 15352976-15357975 Physcomitrium patens
Pp3c8_22330 10.0kb upstream 10.0kb upstream 12967 true Chr08: 15340009-15352975 Physcomitrium patens
Pp3c8_22330 10.0kb upstream 10.0kb upstream 10000 false Chr08: 15340009-15350008 Physcomitrium patens
Pp3c8_22330 10.0kb downstream 10.0kb downstream 12967 true Chr08: 15350009-15362975 Physcomitrium patens
Pp3c8_22330 10.0kb downstream 10.0kb downstream 10000 false Chr08: 15352976-15362975 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121348540 5274 Embryophyte View MSA
123380905 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.037        
cufflinks 4.664        
cufflinks 3.85        
cufflinks 4.278        
cufflinks 3.451        
cufflinks 3.432        
cufflinks 2.706        
cufflinks 2.338        
cufflinks 2.929        
cufflinks 4.196        
cufflinks 4.241        
cufflinks 3.404        
cufflinks 0.894       Low
cufflinks 1.035       Low
cufflinks 4.498        
cufflinks 1.717       Low
cufflinks 1.904        
cufflinks 4.253        
cufflinks 3.983        
cufflinks 2.835        
cufflinks 0.865       Low
cufflinks 3.603        
cufflinks 8.454       High
cufflinks 3.268        
cufflinks 3.544        
cufflinks 3.019        
cufflinks 2.456        
cufflinks 4.178        
cufflinks 3.272        
cufflinks 2.684        

0 Strain