Gene : Pp3c8_6570 P. patens v3.3
Defline:  (1 of 3) PTHR19303 - TRANSPOSON Genomic Order:  303
Name:  ? Pp3c8_6570 Secondary Identifier:  ? PAC:32965287
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

10 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c8_6570 0.5kb upstream 0.5kb upstream 4958 true Chr08: 3797142-3802099 Physcomitrium patens
Pp3c8_6570 0.5kb upstream 0.5kb upstream 500 false Chr08: 3801600-3802099 Physcomitrium patens
Pp3c8_6570 0.5kb downstream 0.5kb downstream 4958 true Chr08: 3796642-3801599 Physcomitrium patens
Pp3c8_6570 0.5kb downstream 0.5kb downstream 500 false Chr08: 3796642-3797141 Physcomitrium patens
Pp3c8_6570 1.0kb upstream 1.0kb upstream 5458 true Chr08: 3797142-3802599 Physcomitrium patens
Pp3c8_6570 1.0kb upstream 1.0kb upstream 1000 false Chr08: 3801600-3802599 Physcomitrium patens
Pp3c8_6570 1.0kb downstream 1.0kb downstream 5458 true Chr08: 3796142-3801599 Physcomitrium patens
Pp3c8_6570 1.0kb downstream 1.0kb downstream 1000 false Chr08: 3796142-3797141 Physcomitrium patens
Pp3c8_6570 2.0kb upstream 2.0kb upstream 6458 true Chr08: 3797142-3803599 Physcomitrium patens
Pp3c8_6570 2.0kb upstream 2.0kb upstream 2000 false Chr08: 3801600-3803599 Physcomitrium patens
Pp3c8_6570 2.0kb downstream 2.0kb downstream 6458 true Chr08: 3795142-3801599 Physcomitrium patens
Pp3c8_6570 2.0kb downstream 2.0kb downstream 2000 false Chr08: 3795142-3797141 Physcomitrium patens
Pp3c8_6570 5.0kb upstream 5.0kb upstream 9458 true Chr08: 3797142-3806599 Physcomitrium patens
Pp3c8_6570 5.0kb upstream 5.0kb upstream 5000 false Chr08: 3801600-3806599 Physcomitrium patens
Pp3c8_6570 5.0kb downstream 5.0kb downstream 9458 true Chr08: 3792142-3801599 Physcomitrium patens
Pp3c8_6570 5.0kb downstream 5.0kb downstream 5000 false Chr08: 3792142-3797141 Physcomitrium patens
Pp3c8_6570 10.0kb upstream 10.0kb upstream 14458 true Chr08: 3797142-3811599 Physcomitrium patens
Pp3c8_6570 10.0kb upstream 10.0kb upstream 10000 false Chr08: 3801600-3811599 Physcomitrium patens
Pp3c8_6570 10.0kb downstream 10.0kb downstream 14458 true Chr08: 3787142-3801599 Physcomitrium patens
Pp3c8_6570 10.0kb downstream 10.0kb downstream 10000 false Chr08: 3787142-3797141 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121336696 5274 Embryophyte View MSA
123373509 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.59        
cufflinks 10.056        
cufflinks 11.184        
cufflinks 9.171        
cufflinks 13.847        
cufflinks 13.249        
cufflinks 6.164       Low
cufflinks 7.179        
cufflinks 10.334        
cufflinks 13.863        
cufflinks 18.45       High
cufflinks 14.739        
cufflinks 6.201       Low
cufflinks 15.924       High
cufflinks 22.347     High High
cufflinks 6.626       Low
cufflinks 10.012        
cufflinks 8.027        
cufflinks 12.242        
cufflinks 12.348        
cufflinks 13.53        
cufflinks 12.286        
cufflinks 4.792       Low
cufflinks 9.015        
cufflinks 17.973     High High
cufflinks 9.489        
cufflinks 9.7        
cufflinks 4.136       Low
cufflinks 13.597        
cufflinks 7.951        

0 Strain