Gene : Pp3c9_14150 P. patens v3.3
Defline:  (1 of 1) PTHR33606:SF3 - PROTEIN YCII Genomic Order:  653
Name:  ? Pp3c9_14150 Secondary Identifier:  ? PAC:32912115
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

10 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c9_14150 0.5kb upstream 0.5kb upstream 3021 true Chr09: 9460240-9463260 Physcomitrium patens
Pp3c9_14150 0.5kb upstream 0.5kb upstream 500 false Chr09: 9460240-9460739 Physcomitrium patens
Pp3c9_14150 0.5kb downstream 0.5kb downstream 3021 true Chr09: 9460740-9463760 Physcomitrium patens
Pp3c9_14150 0.5kb downstream 0.5kb downstream 500 false Chr09: 9463261-9463760 Physcomitrium patens
Pp3c9_14150 1.0kb upstream 1.0kb upstream 3521 true Chr09: 9459740-9463260 Physcomitrium patens
Pp3c9_14150 1.0kb upstream 1.0kb upstream 1000 false Chr09: 9459740-9460739 Physcomitrium patens
Pp3c9_14150 1.0kb downstream 1.0kb downstream 3521 true Chr09: 9460740-9464260 Physcomitrium patens
Pp3c9_14150 1.0kb downstream 1.0kb downstream 1000 false Chr09: 9463261-9464260 Physcomitrium patens
Pp3c9_14150 2.0kb upstream 2.0kb upstream 4521 true Chr09: 9458740-9463260 Physcomitrium patens
Pp3c9_14150 2.0kb upstream 2.0kb upstream 2000 false Chr09: 9458740-9460739 Physcomitrium patens
Pp3c9_14150 2.0kb downstream 2.0kb downstream 4521 true Chr09: 9460740-9465260 Physcomitrium patens
Pp3c9_14150 2.0kb downstream 2.0kb downstream 2000 false Chr09: 9463261-9465260 Physcomitrium patens
Pp3c9_14150 5.0kb upstream 5.0kb upstream 7521 true Chr09: 9455740-9463260 Physcomitrium patens
Pp3c9_14150 5.0kb upstream 5.0kb upstream 5000 false Chr09: 9455740-9460739 Physcomitrium patens
Pp3c9_14150 5.0kb downstream 5.0kb downstream 7521 true Chr09: 9460740-9468260 Physcomitrium patens
Pp3c9_14150 5.0kb downstream 5.0kb downstream 5000 false Chr09: 9463261-9468260 Physcomitrium patens
Pp3c9_14150 10.0kb upstream 10.0kb upstream 12521 true Chr09: 9450740-9463260 Physcomitrium patens
Pp3c9_14150 10.0kb upstream 10.0kb upstream 10000 false Chr09: 9450740-9460739 Physcomitrium patens
Pp3c9_14150 10.0kb downstream 10.0kb downstream 12521 true Chr09: 9460740-9473260 Physcomitrium patens
Pp3c9_14150 10.0kb downstream 10.0kb downstream 10000 false Chr09: 9463261-9473260 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121326621 5274 Embryophyte Singleton cluster - no MSA
123427660 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.575        
cufflinks 5.127        
cufflinks 5.164        
cufflinks 7.815        
cufflinks 5.918        
cufflinks 5.16        
cufflinks 7.404        
cufflinks 2.075        
cufflinks 3.453        
cufflinks 10.606       High
cufflinks 4.661        
cufflinks 0.192       Low
cufflinks 3.032        
cufflinks 2.718        
cufflinks 1.12       Low
cufflinks 3.491        
cufflinks 3.974        
cufflinks 8.078        
cufflinks 6.896        
cufflinks 6.026        
cufflinks 5.698        
cufflinks 5.943        
cufflinks 2.252        
cufflinks 0.18       Low
cufflinks 5.477        
cufflinks 5.352        
cufflinks 5.401        
cufflinks 1.382       Low
cufflinks 4.396        
cufflinks 3.579        

0 Strain