Gene : Pp3c9_26090 P. patens v3.3
Defline:  (1 of 1) PTHR11134:SF4 - AP-4 COMPLEX SUBUNIT BETA-1 Genomic Order:  1188
Name:  ? Pp3c9_26090 Secondary Identifier:  ? PAC:32912460
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c9_26090 0.5kb upstream 0.5kb upstream 7052 true Chr09: 17741628-17748679 Physcomitrium patens
Pp3c9_26090 0.5kb upstream 0.5kb upstream 500 false Chr09: 17748180-17748679 Physcomitrium patens
Pp3c9_26090 0.5kb downstream 0.5kb downstream 7052 true Chr09: 17741128-17748179 Physcomitrium patens
Pp3c9_26090 0.5kb downstream 0.5kb downstream 500 false Chr09: 17741128-17741627 Physcomitrium patens
Pp3c9_26090 1.0kb upstream 1.0kb upstream 7552 true Chr09: 17741628-17749179 Physcomitrium patens
Pp3c9_26090 1.0kb upstream 1.0kb upstream 1000 false Chr09: 17748180-17749179 Physcomitrium patens
Pp3c9_26090 1.0kb downstream 1.0kb downstream 7552 true Chr09: 17740628-17748179 Physcomitrium patens
Pp3c9_26090 1.0kb downstream 1.0kb downstream 1000 false Chr09: 17740628-17741627 Physcomitrium patens
Pp3c9_26090 2.0kb upstream 2.0kb upstream 8552 true Chr09: 17741628-17750179 Physcomitrium patens
Pp3c9_26090 2.0kb upstream 2.0kb upstream 2000 false Chr09: 17748180-17750179 Physcomitrium patens
Pp3c9_26090 2.0kb downstream 2.0kb downstream 8552 true Chr09: 17739628-17748179 Physcomitrium patens
Pp3c9_26090 2.0kb downstream 2.0kb downstream 2000 false Chr09: 17739628-17741627 Physcomitrium patens
Pp3c9_26090 5.0kb upstream 5.0kb upstream 11552 true Chr09: 17741628-17753179 Physcomitrium patens
Pp3c9_26090 5.0kb upstream 5.0kb upstream 5000 false Chr09: 17748180-17753179 Physcomitrium patens
Pp3c9_26090 5.0kb downstream 5.0kb downstream 11552 true Chr09: 17736628-17748179 Physcomitrium patens
Pp3c9_26090 5.0kb downstream 5.0kb downstream 5000 false Chr09: 17736628-17741627 Physcomitrium patens
Pp3c9_26090 10.0kb upstream 10.0kb upstream 16552 true Chr09: 17741628-17758179 Physcomitrium patens
Pp3c9_26090 10.0kb upstream 10.0kb upstream 10000 false Chr09: 17748180-17758179 Physcomitrium patens
Pp3c9_26090 10.0kb downstream 10.0kb downstream 16552 true Chr09: 17731628-17748179 Physcomitrium patens
Pp3c9_26090 10.0kb downstream 10.0kb downstream 10000 false Chr09: 17731628-17741627 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121346542 5274 Embryophyte View MSA
123428647 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.912        
cufflinks 1.87       Low
cufflinks 3.557        
cufflinks 3.876        
cufflinks 2.54        
cufflinks 3.739        
cufflinks 3.082        
cufflinks 1.871       Low
cufflinks 3.668        
cufflinks 3.427        
cufflinks 3.213        
cufflinks 3.312        
cufflinks 3.545        
cufflinks 3.039        
cufflinks 1.68       Low
cufflinks 3.668        
cufflinks 4.497        
cufflinks 3.111        
cufflinks 5.781       High
cufflinks 3.248        
cufflinks 2.786        
cufflinks 0.918       Low
cufflinks 4.64       High
cufflinks 2.649        
cufflinks 3.033        
cufflinks 2.145       Low
cufflinks 3.749        
cufflinks 2.872        
cufflinks 5.591       High
cufflinks 3.647        

0 Strain