Gene : Pp3c9_20800 P. patens v3.3
Defline:  (1 of 3) 2.1.2.10 - Aminomethyltransferase / Tetrahydrofolate aminomethyltransferase Genomic Order:  970
Name:  ? Pp3c9_20800 Secondary Identifier:  ? PAC:32913976
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ppatens GLYCLEAV-PWY Physcomitrium patens pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c9_20800 0.5kb upstream 0.5kb upstream 5503 true Chr09: 14047836-14053338 Physcomitrium patens
Pp3c9_20800 0.5kb upstream 0.5kb upstream 500 false Chr09: 14052839-14053338 Physcomitrium patens
Pp3c9_20800 0.5kb downstream 0.5kb downstream 5503 true Chr09: 14047336-14052838 Physcomitrium patens
Pp3c9_20800 0.5kb downstream 0.5kb downstream 500 false Chr09: 14047336-14047835 Physcomitrium patens
Pp3c9_20800 1.0kb upstream 1.0kb upstream 6003 true Chr09: 14047836-14053838 Physcomitrium patens
Pp3c9_20800 1.0kb upstream 1.0kb upstream 1000 false Chr09: 14052839-14053838 Physcomitrium patens
Pp3c9_20800 1.0kb downstream 1.0kb downstream 6003 true Chr09: 14046836-14052838 Physcomitrium patens
Pp3c9_20800 1.0kb downstream 1.0kb downstream 1000 false Chr09: 14046836-14047835 Physcomitrium patens
Pp3c9_20800 2.0kb upstream 2.0kb upstream 7003 true Chr09: 14047836-14054838 Physcomitrium patens
Pp3c9_20800 2.0kb upstream 2.0kb upstream 2000 false Chr09: 14052839-14054838 Physcomitrium patens
Pp3c9_20800 2.0kb downstream 2.0kb downstream 7003 true Chr09: 14045836-14052838 Physcomitrium patens
Pp3c9_20800 2.0kb downstream 2.0kb downstream 2000 false Chr09: 14045836-14047835 Physcomitrium patens
Pp3c9_20800 5.0kb upstream 5.0kb upstream 10003 true Chr09: 14047836-14057838 Physcomitrium patens
Pp3c9_20800 5.0kb upstream 5.0kb upstream 5000 false Chr09: 14052839-14057838 Physcomitrium patens
Pp3c9_20800 5.0kb downstream 5.0kb downstream 10003 true Chr09: 14042836-14052838 Physcomitrium patens
Pp3c9_20800 5.0kb downstream 5.0kb downstream 5000 false Chr09: 14042836-14047835 Physcomitrium patens
Pp3c9_20800 10.0kb upstream 10.0kb upstream 15003 true Chr09: 14047836-14062838 Physcomitrium patens
Pp3c9_20800 10.0kb upstream 10.0kb upstream 10000 false Chr09: 14052839-14062838 Physcomitrium patens
Pp3c9_20800 10.0kb downstream 10.0kb downstream 15003 true Chr09: 14037836-14052838 Physcomitrium patens
Pp3c9_20800 10.0kb downstream 10.0kb downstream 10000 false Chr09: 14037836-14047835 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121345133 5274 Embryophyte View MSA
123423881 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.932       High
cufflinks 2.653        
cufflinks 1.911        
cufflinks 1.931        
cufflinks 2.38        
cufflinks 0.568        
cufflinks 0.08       Low
cufflinks 0.942        
cufflinks 3.167        
cufflinks 1.523        
cufflinks 0.091       Low
cufflinks 1.478        
cufflinks 1.655        
cufflinks 2.902        
cufflinks 0.795        
cufflinks 0.96        
cufflinks 3.468        
cufflinks 0.94        
cufflinks 0.47        
cufflinks 1.754        
cufflinks 2.872        
cufflinks 2.721        
cufflinks 3.415        
cufflinks 3.919       High
cufflinks 2.203        
cufflinks 1.942        
cufflinks 0.178       Low
cufflinks 4.542       High
cufflinks 1.842        
cufflinks 0.132       Low

0 Strain