Gene : Pp3c9_4100 P. patens v3.3
Defline:  (1 of 4) PF00069//PF00092//PF02743 - Protein kinase domain (Pkinase) // von Willebrand factor type A domain (VWA) // Cache domain (Cache_1) Genomic Order:  214
Name:  ? Pp3c9_4100 Secondary Identifier:  ? PAC:32912913
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c9_4100 0.5kb upstream 0.5kb upstream 6854 true Chr09: 2368893-2375746 Physcomitrium patens
Pp3c9_4100 0.5kb upstream 0.5kb upstream 500 false Chr09: 2368893-2369392 Physcomitrium patens
Pp3c9_4100 0.5kb downstream 0.5kb downstream 6854 true Chr09: 2369393-2376246 Physcomitrium patens
Pp3c9_4100 0.5kb downstream 0.5kb downstream 500 false Chr09: 2375747-2376246 Physcomitrium patens
Pp3c9_4100 1.0kb upstream 1.0kb upstream 7354 true Chr09: 2368393-2375746 Physcomitrium patens
Pp3c9_4100 1.0kb upstream 1.0kb upstream 1000 false Chr09: 2368393-2369392 Physcomitrium patens
Pp3c9_4100 1.0kb downstream 1.0kb downstream 7354 true Chr09: 2369393-2376746 Physcomitrium patens
Pp3c9_4100 1.0kb downstream 1.0kb downstream 1000 false Chr09: 2375747-2376746 Physcomitrium patens
Pp3c9_4100 2.0kb upstream 2.0kb upstream 8354 true Chr09: 2367393-2375746 Physcomitrium patens
Pp3c9_4100 2.0kb upstream 2.0kb upstream 2000 false Chr09: 2367393-2369392 Physcomitrium patens
Pp3c9_4100 2.0kb downstream 2.0kb downstream 8354 true Chr09: 2369393-2377746 Physcomitrium patens
Pp3c9_4100 2.0kb downstream 2.0kb downstream 2000 false Chr09: 2375747-2377746 Physcomitrium patens
Pp3c9_4100 5.0kb upstream 5.0kb upstream 11354 true Chr09: 2364393-2375746 Physcomitrium patens
Pp3c9_4100 5.0kb upstream 5.0kb upstream 5000 false Chr09: 2364393-2369392 Physcomitrium patens
Pp3c9_4100 5.0kb downstream 5.0kb downstream 11354 true Chr09: 2369393-2380746 Physcomitrium patens
Pp3c9_4100 5.0kb downstream 5.0kb downstream 5000 false Chr09: 2375747-2380746 Physcomitrium patens
Pp3c9_4100 10.0kb upstream 10.0kb upstream 16354 true Chr09: 2359393-2375746 Physcomitrium patens
Pp3c9_4100 10.0kb upstream 10.0kb upstream 10000 false Chr09: 2359393-2369392 Physcomitrium patens
Pp3c9_4100 10.0kb downstream 10.0kb downstream 16354 true Chr09: 2369393-2385746 Physcomitrium patens
Pp3c9_4100 10.0kb downstream 10.0kb downstream 10000 false Chr09: 2375747-2385746 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121336397 5274 Embryophyte View MSA
123373229 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.142       High
cufflinks 0.013     Low  
cufflinks 0.049     Low  
cufflinks 0.01     Low  
cufflinks 0.212       High
cufflinks 0.141       High
cufflinks 0.073     Low  
cufflinks 0.003     Low Low
cufflinks 0.459       High
cufflinks 0.085     Low  
cufflinks 0.264       High
cufflinks 0.074     Low  
cufflinks 0.039     Low  
cufflinks 0.017     Low  
cufflinks 0.01     Low  
cufflinks 0.027     Low  
cufflinks 0.003     Low Low
cufflinks 0.005     Low Low
cufflinks 0.068     Low  
cufflinks 0.101     Low  
cufflinks 0.127        
cufflinks 0.083     Low  
cufflinks 0.025     Low  
cufflinks 0.06     Low  
cufflinks 0.005     Low Low
cufflinks 0.006     Low Low
cufflinks 0.028     Low  
cufflinks 0.04     Low  
cufflinks 0.028     Low  
cufflinks 0.104        

0 Strain