Gene : Pp3c10_16570 P. patens v3.3
Defline:  (1 of 1) PTHR11472:SF1 - TFIIH BASAL TRANSCRIPTION FACTOR COMPLEX HELICASE XPD SUBUNIT Genomic Order:  793
Name:  ? Pp3c10_16570 Secondary Identifier:  ? PAC:32900781
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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11 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c10_16570 0.5kb upstream 0.5kb upstream 7130 true Chr10: 11200802-11207931 Physcomitrium patens
Pp3c10_16570 0.5kb upstream 0.5kb upstream 500 false Chr10: 11207432-11207931 Physcomitrium patens
Pp3c10_16570 0.5kb downstream 0.5kb downstream 7130 true Chr10: 11200302-11207431 Physcomitrium patens
Pp3c10_16570 0.5kb downstream 0.5kb downstream 500 false Chr10: 11200302-11200801 Physcomitrium patens
Pp3c10_16570 1.0kb upstream 1.0kb upstream 7630 true Chr10: 11200802-11208431 Physcomitrium patens
Pp3c10_16570 1.0kb upstream 1.0kb upstream 1000 false Chr10: 11207432-11208431 Physcomitrium patens
Pp3c10_16570 1.0kb downstream 1.0kb downstream 7630 true Chr10: 11199802-11207431 Physcomitrium patens
Pp3c10_16570 1.0kb downstream 1.0kb downstream 1000 false Chr10: 11199802-11200801 Physcomitrium patens
Pp3c10_16570 2.0kb upstream 2.0kb upstream 8630 true Chr10: 11200802-11209431 Physcomitrium patens
Pp3c10_16570 2.0kb upstream 2.0kb upstream 2000 false Chr10: 11207432-11209431 Physcomitrium patens
Pp3c10_16570 2.0kb downstream 2.0kb downstream 8630 true Chr10: 11198802-11207431 Physcomitrium patens
Pp3c10_16570 2.0kb downstream 2.0kb downstream 2000 false Chr10: 11198802-11200801 Physcomitrium patens
Pp3c10_16570 5.0kb upstream 5.0kb upstream 11630 true Chr10: 11200802-11212431 Physcomitrium patens
Pp3c10_16570 5.0kb upstream 5.0kb upstream 5000 false Chr10: 11207432-11212431 Physcomitrium patens
Pp3c10_16570 5.0kb downstream 5.0kb downstream 11630 true Chr10: 11195802-11207431 Physcomitrium patens
Pp3c10_16570 5.0kb downstream 5.0kb downstream 5000 false Chr10: 11195802-11200801 Physcomitrium patens
Pp3c10_16570 10.0kb upstream 10.0kb upstream 16630 true Chr10: 11200802-11217431 Physcomitrium patens
Pp3c10_16570 10.0kb upstream 10.0kb upstream 10000 false Chr10: 11207432-11217431 Physcomitrium patens
Pp3c10_16570 10.0kb downstream 10.0kb downstream 16630 true Chr10: 11190802-11207431 Physcomitrium patens
Pp3c10_16570 10.0kb downstream 10.0kb downstream 10000 false Chr10: 11190802-11200801 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121344254 5274 Embryophyte View MSA
123426727 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.764        
cufflinks 0.669        
cufflinks 0.869        
cufflinks 0.521       Low
cufflinks 0.776        
cufflinks 0.958        
cufflinks 0.719        
cufflinks 0.908        
cufflinks 0.966        
cufflinks 0.927        
cufflinks 0.55       Low
cufflinks 0.712        
cufflinks 0.706        
cufflinks 0.774        
cufflinks 0.945        
cufflinks 0.735        
cufflinks 1.146       High
cufflinks 0.614       Low
cufflinks 0.975       High
cufflinks 0.693        
cufflinks 0.94        
cufflinks 1.027       High
cufflinks 0.896        
cufflinks 0.725        
cufflinks 1.045       High
cufflinks 0.824        
cufflinks 0.983       High
cufflinks 0.533       Low
cufflinks 0.809        
cufflinks 0.618       Low

0 Strain