Gene : Pp3c10_3550 P. patens v3.3
Defline:  (1 of 4) PTHR22950:SF237 - AMINO ACID TRANSPORTER-RELATED Genomic Order:  169
Name:  ? Pp3c10_3550 Secondary Identifier:  ? PAC:32900384
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c10_3550 0.5kb upstream 0.5kb upstream 3128 true Chr10: 2656554-2659681 Physcomitrium patens
Pp3c10_3550 0.5kb upstream 0.5kb upstream 500 false Chr10: 2656554-2657053 Physcomitrium patens
Pp3c10_3550 0.5kb downstream 0.5kb downstream 3128 true Chr10: 2657054-2660181 Physcomitrium patens
Pp3c10_3550 0.5kb downstream 0.5kb downstream 500 false Chr10: 2659682-2660181 Physcomitrium patens
Pp3c10_3550 1.0kb upstream 1.0kb upstream 3628 true Chr10: 2656054-2659681 Physcomitrium patens
Pp3c10_3550 1.0kb upstream 1.0kb upstream 1000 false Chr10: 2656054-2657053 Physcomitrium patens
Pp3c10_3550 1.0kb downstream 1.0kb downstream 3628 true Chr10: 2657054-2660681 Physcomitrium patens
Pp3c10_3550 1.0kb downstream 1.0kb downstream 1000 false Chr10: 2659682-2660681 Physcomitrium patens
Pp3c10_3550 2.0kb upstream 2.0kb upstream 4628 true Chr10: 2655054-2659681 Physcomitrium patens
Pp3c10_3550 2.0kb upstream 2.0kb upstream 2000 false Chr10: 2655054-2657053 Physcomitrium patens
Pp3c10_3550 2.0kb downstream 2.0kb downstream 4628 true Chr10: 2657054-2661681 Physcomitrium patens
Pp3c10_3550 2.0kb downstream 2.0kb downstream 2000 false Chr10: 2659682-2661681 Physcomitrium patens
Pp3c10_3550 5.0kb upstream 5.0kb upstream 7628 true Chr10: 2652054-2659681 Physcomitrium patens
Pp3c10_3550 5.0kb upstream 5.0kb upstream 5000 false Chr10: 2652054-2657053 Physcomitrium patens
Pp3c10_3550 5.0kb downstream 5.0kb downstream 7628 true Chr10: 2657054-2664681 Physcomitrium patens
Pp3c10_3550 5.0kb downstream 5.0kb downstream 5000 false Chr10: 2659682-2664681 Physcomitrium patens
Pp3c10_3550 10.0kb upstream 10.0kb upstream 12628 true Chr10: 2647054-2659681 Physcomitrium patens
Pp3c10_3550 10.0kb upstream 10.0kb upstream 10000 false Chr10: 2647054-2657053 Physcomitrium patens
Pp3c10_3550 10.0kb downstream 10.0kb downstream 12628 true Chr10: 2657054-2669681 Physcomitrium patens
Pp3c10_3550 10.0kb downstream 10.0kb downstream 10000 false Chr10: 2659682-2669681 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121345093 5274 Embryophyte View MSA
123428317 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 127.621     High High
cufflinks 29.407     High  
cufflinks 24.6     High  
cufflinks 31.04     High  
cufflinks 2.325       Low
cufflinks 27.331     High  
cufflinks 9.516        
cufflinks 5.788       Low
cufflinks 15.033        
cufflinks 19.063        
cufflinks 13.854        
cufflinks 16.857        
cufflinks 11.947        
cufflinks 13.658        
cufflinks 46.812     High High
cufflinks 12.2        
cufflinks 10.235        
cufflinks 9.324        
cufflinks 13.031        
cufflinks 25.361     High  
cufflinks 18.176        
cufflinks 13.834        
cufflinks 22.38     High  
cufflinks 2.523       Low
cufflinks 24.035     High  
cufflinks 10.028        
cufflinks 38.626     High High
cufflinks 37.276     High High
cufflinks 12.019        
cufflinks 20.227     High  

0 Strain