Gene : Pp3c10_230 P. patens v3.3
Defline:  (1 of 1) PTHR13452//PTHR13452:SF9 - THUMP DOMAIN CONTAINING PROTEIN 1-RELATED Genomic Order:  8
Name:  ? Pp3c10_230 Secondary Identifier:  ? PAC:32899615
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0 Pathways

Genomics

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Expression

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9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c10_230 0.5kb upstream 0.5kb upstream 3940 true Chr10: 157967-161906 Physcomitrium patens
Pp3c10_230 0.5kb upstream 0.5kb upstream 500 false Chr10: 161407-161906 Physcomitrium patens
Pp3c10_230 0.5kb downstream 0.5kb downstream 3940 true Chr10: 157467-161406 Physcomitrium patens
Pp3c10_230 0.5kb downstream 0.5kb downstream 500 false Chr10: 157467-157966 Physcomitrium patens
Pp3c10_230 1.0kb upstream 1.0kb upstream 4440 true Chr10: 157967-162406 Physcomitrium patens
Pp3c10_230 1.0kb upstream 1.0kb upstream 1000 false Chr10: 161407-162406 Physcomitrium patens
Pp3c10_230 1.0kb downstream 1.0kb downstream 4440 true Chr10: 156967-161406 Physcomitrium patens
Pp3c10_230 1.0kb downstream 1.0kb downstream 1000 false Chr10: 156967-157966 Physcomitrium patens
Pp3c10_230 2.0kb upstream 2.0kb upstream 5440 true Chr10: 157967-163406 Physcomitrium patens
Pp3c10_230 2.0kb upstream 2.0kb upstream 2000 false Chr10: 161407-163406 Physcomitrium patens
Pp3c10_230 2.0kb downstream 2.0kb downstream 5440 true Chr10: 155967-161406 Physcomitrium patens
Pp3c10_230 2.0kb downstream 2.0kb downstream 2000 false Chr10: 155967-157966 Physcomitrium patens
Pp3c10_230 5.0kb upstream 5.0kb upstream 8440 true Chr10: 157967-166406 Physcomitrium patens
Pp3c10_230 5.0kb upstream 5.0kb upstream 5000 false Chr10: 161407-166406 Physcomitrium patens
Pp3c10_230 5.0kb downstream 5.0kb downstream 8440 true Chr10: 152967-161406 Physcomitrium patens
Pp3c10_230 5.0kb downstream 5.0kb downstream 5000 false Chr10: 152967-157966 Physcomitrium patens
Pp3c10_230 10.0kb upstream 10.0kb upstream 13440 true Chr10: 157967-171406 Physcomitrium patens
Pp3c10_230 10.0kb upstream 10.0kb upstream 10000 false Chr10: 161407-171406 Physcomitrium patens
Pp3c10_230 10.0kb downstream 10.0kb downstream 13440 true Chr10: 147967-161406 Physcomitrium patens
Pp3c10_230 10.0kb downstream 10.0kb downstream 10000 false Chr10: 147967-157966 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121345171 5274 Embryophyte View MSA
123380169 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.732        
cufflinks 2.937        
cufflinks 3.16        
cufflinks 2.278        
cufflinks 3.154        
cufflinks 2.306        
cufflinks 2.838        
cufflinks 3.144        
cufflinks 3.336        
cufflinks 2.156        
cufflinks 3.317        
cufflinks 2.75        
cufflinks 2.903        
cufflinks 2.281        
cufflinks 3.247        
cufflinks 2.119        
cufflinks 2.202        
cufflinks 2.123        
cufflinks 4.119       High
cufflinks 2.296        
cufflinks 3.207        
cufflinks 1.879       Low
cufflinks 3.195        
cufflinks 1.274       Low
cufflinks 3.352        
cufflinks 2.034       Low
cufflinks 1.966       Low
cufflinks 4.376       High
cufflinks 2.876        
cufflinks 3.567       High

0 Strain