Gene : Pp3c10_4250 P. patens v3.3
Defline:  (1 of 1) PTHR11139:SF71 - SERINE/THREONINE-PROTEIN KINASE SMG1 Genomic Order:  207
Name:  ? Pp3c10_4250 Secondary Identifier:  ? PAC:32900444
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c10_4250 0.5kb upstream 0.5kb upstream 18115 true Chr10: 3069340-3087454 Physcomitrium patens
Pp3c10_4250 0.5kb upstream 0.5kb upstream 500 false Chr10: 3086955-3087454 Physcomitrium patens
Pp3c10_4250 0.5kb downstream 0.5kb downstream 18115 true Chr10: 3068840-3086954 Physcomitrium patens
Pp3c10_4250 0.5kb downstream 0.5kb downstream 500 false Chr10: 3068840-3069339 Physcomitrium patens
Pp3c10_4250 1.0kb upstream 1.0kb upstream 18615 true Chr10: 3069340-3087954 Physcomitrium patens
Pp3c10_4250 1.0kb upstream 1.0kb upstream 1000 false Chr10: 3086955-3087954 Physcomitrium patens
Pp3c10_4250 1.0kb downstream 1.0kb downstream 18615 true Chr10: 3068340-3086954 Physcomitrium patens
Pp3c10_4250 1.0kb downstream 1.0kb downstream 1000 false Chr10: 3068340-3069339 Physcomitrium patens
Pp3c10_4250 2.0kb upstream 2.0kb upstream 19615 true Chr10: 3069340-3088954 Physcomitrium patens
Pp3c10_4250 2.0kb upstream 2.0kb upstream 2000 false Chr10: 3086955-3088954 Physcomitrium patens
Pp3c10_4250 2.0kb downstream 2.0kb downstream 19615 true Chr10: 3067340-3086954 Physcomitrium patens
Pp3c10_4250 2.0kb downstream 2.0kb downstream 2000 false Chr10: 3067340-3069339 Physcomitrium patens
Pp3c10_4250 5.0kb upstream 5.0kb upstream 22615 true Chr10: 3069340-3091954 Physcomitrium patens
Pp3c10_4250 5.0kb upstream 5.0kb upstream 5000 false Chr10: 3086955-3091954 Physcomitrium patens
Pp3c10_4250 5.0kb downstream 5.0kb downstream 22615 true Chr10: 3064340-3086954 Physcomitrium patens
Pp3c10_4250 5.0kb downstream 5.0kb downstream 5000 false Chr10: 3064340-3069339 Physcomitrium patens
Pp3c10_4250 10.0kb upstream 10.0kb upstream 27615 true Chr10: 3069340-3096954 Physcomitrium patens
Pp3c10_4250 10.0kb upstream 10.0kb upstream 10000 false Chr10: 3086955-3096954 Physcomitrium patens
Pp3c10_4250 10.0kb downstream 10.0kb downstream 27615 true Chr10: 3059340-3086954 Physcomitrium patens
Pp3c10_4250 10.0kb downstream 10.0kb downstream 10000 false Chr10: 3059340-3069339 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121348670 5274 Embryophyte View MSA
123425696 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.723        
cufflinks 0.487       Low
cufflinks 0.505       Low
cufflinks 0.721        
cufflinks 1.579       High
cufflinks 1.141        
cufflinks 1.158       High
cufflinks 0.506       Low
cufflinks 0.613        
cufflinks 0.529       Low
cufflinks 0.503       Low
cufflinks 0.87        
cufflinks 0.859        
cufflinks 0.637        
cufflinks 1.476       High
cufflinks 0.861        
cufflinks 0.655        
cufflinks 1.434       High
cufflinks 0.444       Low
cufflinks 1.05        
cufflinks 0.798        
cufflinks 0.682        
cufflinks 1.171       High
cufflinks 0.816        
cufflinks 1.262       High
cufflinks 0.611        
cufflinks 0.59        
cufflinks 1.214       High
cufflinks 0.662        
cufflinks 0.593        

0 Strain