Gene : Pp3c10_4870 P. patens v3.3
Defline:  (1 of 6) PF11937 - Protein of unknown function (DUF3455) (DUF3455) Genomic Order:  239
Name:  ? Pp3c10_4870 Secondary Identifier:  ? PAC:32900226
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c10_4870 0.5kb upstream 0.5kb upstream 5068 true Chr10: 3338564-3343631 Physcomitrium patens
Pp3c10_4870 0.5kb upstream 0.5kb upstream 500 false Chr10: 3338564-3339063 Physcomitrium patens
Pp3c10_4870 0.5kb downstream 0.5kb downstream 5068 true Chr10: 3339064-3344131 Physcomitrium patens
Pp3c10_4870 0.5kb downstream 0.5kb downstream 500 false Chr10: 3343632-3344131 Physcomitrium patens
Pp3c10_4870 1.0kb upstream 1.0kb upstream 5568 true Chr10: 3338064-3343631 Physcomitrium patens
Pp3c10_4870 1.0kb upstream 1.0kb upstream 1000 false Chr10: 3338064-3339063 Physcomitrium patens
Pp3c10_4870 1.0kb downstream 1.0kb downstream 5568 true Chr10: 3339064-3344631 Physcomitrium patens
Pp3c10_4870 1.0kb downstream 1.0kb downstream 1000 false Chr10: 3343632-3344631 Physcomitrium patens
Pp3c10_4870 2.0kb upstream 2.0kb upstream 6568 true Chr10: 3337064-3343631 Physcomitrium patens
Pp3c10_4870 2.0kb upstream 2.0kb upstream 2000 false Chr10: 3337064-3339063 Physcomitrium patens
Pp3c10_4870 2.0kb downstream 2.0kb downstream 6568 true Chr10: 3339064-3345631 Physcomitrium patens
Pp3c10_4870 2.0kb downstream 2.0kb downstream 2000 false Chr10: 3343632-3345631 Physcomitrium patens
Pp3c10_4870 5.0kb upstream 5.0kb upstream 9568 true Chr10: 3334064-3343631 Physcomitrium patens
Pp3c10_4870 5.0kb upstream 5.0kb upstream 5000 false Chr10: 3334064-3339063 Physcomitrium patens
Pp3c10_4870 5.0kb downstream 5.0kb downstream 9568 true Chr10: 3339064-3348631 Physcomitrium patens
Pp3c10_4870 5.0kb downstream 5.0kb downstream 5000 false Chr10: 3343632-3348631 Physcomitrium patens
Pp3c10_4870 10.0kb upstream 10.0kb upstream 14568 true Chr10: 3329064-3343631 Physcomitrium patens
Pp3c10_4870 10.0kb upstream 10.0kb upstream 10000 false Chr10: 3329064-3339063 Physcomitrium patens
Pp3c10_4870 10.0kb downstream 10.0kb downstream 14568 true Chr10: 3339064-3353631 Physcomitrium patens
Pp3c10_4870 10.0kb downstream 10.0kb downstream 10000 false Chr10: 3343632-3353631 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121342982 5274 Embryophyte View MSA
123379356 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.583        
cufflinks 0.546        
cufflinks 0.285        
cufflinks 0.549        
cufflinks 0.081     Low  
cufflinks 0.078        
cufflinks 0.078     Low  
cufflinks 0.041     Low Low
cufflinks 0.078     Low  
cufflinks 0.046     Low  
cufflinks 0.289        
cufflinks 0.342        
cufflinks 0.234        
cufflinks 0.105        
cufflinks 0.144        
cufflinks 0.225        
cufflinks 0.352        
cufflinks 0.073     Low  
cufflinks 0.151        
cufflinks 1.059       High
cufflinks 0.096        
cufflinks 0.159        
cufflinks 0.062     Low  
cufflinks 0.1        
cufflinks 0.321        
cufflinks 30.55     High High
cufflinks 0.025     Low Low
cufflinks 0.063        
cufflinks 0.153        
cufflinks 0.28        

0 Strain