Gene : Pp3c11_12290 P. patens v3.3
Defline:  (1 of 1) PTHR10972:SF71 - OXYSTEROL-BINDING PROTEIN Genomic Order:  589
Name:  ? Pp3c11_12290 Secondary Identifier:  ? PAC:32959052
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c11_12290 0.5kb upstream 0.5kb upstream 9788 true Chr11: 7937932-7947719 Physcomitrium patens
Pp3c11_12290 0.5kb upstream 0.5kb upstream 500 false Chr11: 7947220-7947719 Physcomitrium patens
Pp3c11_12290 0.5kb downstream 0.5kb downstream 9788 true Chr11: 7937432-7947219 Physcomitrium patens
Pp3c11_12290 0.5kb downstream 0.5kb downstream 500 false Chr11: 7937432-7937931 Physcomitrium patens
Pp3c11_12290 1.0kb upstream 1.0kb upstream 10288 true Chr11: 7937932-7948219 Physcomitrium patens
Pp3c11_12290 1.0kb upstream 1.0kb upstream 1000 false Chr11: 7947220-7948219 Physcomitrium patens
Pp3c11_12290 1.0kb downstream 1.0kb downstream 10288 true Chr11: 7936932-7947219 Physcomitrium patens
Pp3c11_12290 1.0kb downstream 1.0kb downstream 1000 false Chr11: 7936932-7937931 Physcomitrium patens
Pp3c11_12290 2.0kb upstream 2.0kb upstream 11288 true Chr11: 7937932-7949219 Physcomitrium patens
Pp3c11_12290 2.0kb upstream 2.0kb upstream 2000 false Chr11: 7947220-7949219 Physcomitrium patens
Pp3c11_12290 2.0kb downstream 2.0kb downstream 11288 true Chr11: 7935932-7947219 Physcomitrium patens
Pp3c11_12290 2.0kb downstream 2.0kb downstream 2000 false Chr11: 7935932-7937931 Physcomitrium patens
Pp3c11_12290 5.0kb upstream 5.0kb upstream 14288 true Chr11: 7937932-7952219 Physcomitrium patens
Pp3c11_12290 5.0kb upstream 5.0kb upstream 5000 false Chr11: 7947220-7952219 Physcomitrium patens
Pp3c11_12290 5.0kb downstream 5.0kb downstream 14288 true Chr11: 7932932-7947219 Physcomitrium patens
Pp3c11_12290 5.0kb downstream 5.0kb downstream 5000 false Chr11: 7932932-7937931 Physcomitrium patens
Pp3c11_12290 10.0kb upstream 10.0kb upstream 19288 true Chr11: 7937932-7957219 Physcomitrium patens
Pp3c11_12290 10.0kb upstream 10.0kb upstream 10000 false Chr11: 7947220-7957219 Physcomitrium patens
Pp3c11_12290 10.0kb downstream 10.0kb downstream 19288 true Chr11: 7927932-7947219 Physcomitrium patens
Pp3c11_12290 10.0kb downstream 10.0kb downstream 10000 false Chr11: 7927932-7937931 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121342833 5274 Embryophyte View MSA
123427414 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.657        
cufflinks 2.907       High
cufflinks 3.275       High
cufflinks 1.092       Low
cufflinks 1.901        
cufflinks 1.581        
cufflinks 1.998        
cufflinks 1.117       Low
cufflinks 3.074       High
cufflinks 0.636       Low
cufflinks 3.872       High
cufflinks 2.201        
cufflinks 1.639        
cufflinks 2.386        
cufflinks 1.594        
cufflinks 3.574       High
cufflinks 2.227        
cufflinks 2.069        
cufflinks 1.384        
cufflinks 2.493        
cufflinks 1.196       Low
cufflinks 1.209       Low
cufflinks 1.403        
cufflinks 1.421        
cufflinks 1.292        
cufflinks 1.839        
cufflinks 1.312        
cufflinks 3.743       High
cufflinks 1.784        
cufflinks 1.767        

0 Strain