Gene : Pp3c11_21780 P. patens v3.3
Defline:  (1 of 18) KOG0005 - Ubiquitin-like protein Genomic Order:  1009
Name:  ? Pp3c11_21780 Secondary Identifier:  ? PAC:32957250
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c11_21780 0.5kb upstream 0.5kb upstream 4898 true Chr11: 14499947-14504844 Physcomitrium patens
Pp3c11_21780 0.5kb upstream 0.5kb upstream 500 false Chr11: 14499947-14500446 Physcomitrium patens
Pp3c11_21780 0.5kb downstream 0.5kb downstream 4898 true Chr11: 14500447-14505344 Physcomitrium patens
Pp3c11_21780 0.5kb downstream 0.5kb downstream 500 false Chr11: 14504845-14505344 Physcomitrium patens
Pp3c11_21780 1.0kb upstream 1.0kb upstream 5398 true Chr11: 14499447-14504844 Physcomitrium patens
Pp3c11_21780 1.0kb upstream 1.0kb upstream 1000 false Chr11: 14499447-14500446 Physcomitrium patens
Pp3c11_21780 1.0kb downstream 1.0kb downstream 5398 true Chr11: 14500447-14505844 Physcomitrium patens
Pp3c11_21780 1.0kb downstream 1.0kb downstream 1000 false Chr11: 14504845-14505844 Physcomitrium patens
Pp3c11_21780 2.0kb upstream 2.0kb upstream 6398 true Chr11: 14498447-14504844 Physcomitrium patens
Pp3c11_21780 2.0kb upstream 2.0kb upstream 2000 false Chr11: 14498447-14500446 Physcomitrium patens
Pp3c11_21780 2.0kb downstream 2.0kb downstream 6398 true Chr11: 14500447-14506844 Physcomitrium patens
Pp3c11_21780 2.0kb downstream 2.0kb downstream 2000 false Chr11: 14504845-14506844 Physcomitrium patens
Pp3c11_21780 5.0kb upstream 5.0kb upstream 9398 true Chr11: 14495447-14504844 Physcomitrium patens
Pp3c11_21780 5.0kb upstream 5.0kb upstream 5000 false Chr11: 14495447-14500446 Physcomitrium patens
Pp3c11_21780 5.0kb downstream 5.0kb downstream 9398 true Chr11: 14500447-14509844 Physcomitrium patens
Pp3c11_21780 5.0kb downstream 5.0kb downstream 5000 false Chr11: 14504845-14509844 Physcomitrium patens
Pp3c11_21780 10.0kb upstream 10.0kb upstream 14398 true Chr11: 14490447-14504844 Physcomitrium patens
Pp3c11_21780 10.0kb upstream 10.0kb upstream 10000 false Chr11: 14490447-14500446 Physcomitrium patens
Pp3c11_21780 10.0kb downstream 10.0kb downstream 14398 true Chr11: 14500447-14514844 Physcomitrium patens
Pp3c11_21780 10.0kb downstream 10.0kb downstream 10000 false Chr11: 14504845-14514844 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121342997 5274 Embryophyte View MSA
123379368 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.635        
cufflinks 10.6        
cufflinks 4.995        
cufflinks 0.971        
cufflinks 10.06        
cufflinks 15.42        
cufflinks 9.401        
cufflinks 0.03     Low Low
cufflinks 4.538        
cufflinks 8.386        
cufflinks 1.074        
cufflinks 2.332        
cufflinks 8.962        
cufflinks 11.089        
cufflinks 9.099        
cufflinks 2.454        
cufflinks 3.512        
cufflinks 13.788        
cufflinks 8.604        
cufflinks 0.595        
cufflinks 2.832        
cufflinks 0.065       Low
cufflinks 8.501        
cufflinks 14.815        
cufflinks 0.035     Low Low
cufflinks 4.653        
cufflinks 9.399        
cufflinks 2.12        
cufflinks 4.064        
cufflinks 3.008        

0 Strain