Gene : Pp3c11_2170 P. patens v3.3
Genomic Order:  108 Name:  ? Pp3c11_2170
Secondary Identifier:  ? PAC:32956694
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c11_2170 0.5kb upstream 0.5kb upstream 3862 true Chr11: 1242967-1246828 Physcomitrium patens
Pp3c11_2170 0.5kb upstream 0.5kb upstream 500 false Chr11: 1242967-1243466 Physcomitrium patens
Pp3c11_2170 0.5kb downstream 0.5kb downstream 3862 true Chr11: 1243467-1247328 Physcomitrium patens
Pp3c11_2170 0.5kb downstream 0.5kb downstream 500 false Chr11: 1246829-1247328 Physcomitrium patens
Pp3c11_2170 1.0kb upstream 1.0kb upstream 4362 true Chr11: 1242467-1246828 Physcomitrium patens
Pp3c11_2170 1.0kb upstream 1.0kb upstream 1000 false Chr11: 1242467-1243466 Physcomitrium patens
Pp3c11_2170 1.0kb downstream 1.0kb downstream 4362 true Chr11: 1243467-1247828 Physcomitrium patens
Pp3c11_2170 1.0kb downstream 1.0kb downstream 1000 false Chr11: 1246829-1247828 Physcomitrium patens
Pp3c11_2170 2.0kb upstream 2.0kb upstream 5362 true Chr11: 1241467-1246828 Physcomitrium patens
Pp3c11_2170 2.0kb upstream 2.0kb upstream 2000 false Chr11: 1241467-1243466 Physcomitrium patens
Pp3c11_2170 2.0kb downstream 2.0kb downstream 5362 true Chr11: 1243467-1248828 Physcomitrium patens
Pp3c11_2170 2.0kb downstream 2.0kb downstream 2000 false Chr11: 1246829-1248828 Physcomitrium patens
Pp3c11_2170 5.0kb upstream 5.0kb upstream 8362 true Chr11: 1238467-1246828 Physcomitrium patens
Pp3c11_2170 5.0kb upstream 5.0kb upstream 5000 false Chr11: 1238467-1243466 Physcomitrium patens
Pp3c11_2170 5.0kb downstream 5.0kb downstream 8362 true Chr11: 1243467-1251828 Physcomitrium patens
Pp3c11_2170 5.0kb downstream 5.0kb downstream 5000 false Chr11: 1246829-1251828 Physcomitrium patens
Pp3c11_2170 10.0kb upstream 10.0kb upstream 13362 true Chr11: 1233467-1246828 Physcomitrium patens
Pp3c11_2170 10.0kb upstream 10.0kb upstream 10000 false Chr11: 1233467-1243466 Physcomitrium patens
Pp3c11_2170 10.0kb downstream 10.0kb downstream 13362 true Chr11: 1243467-1256828 Physcomitrium patens
Pp3c11_2170 10.0kb downstream 10.0kb downstream 10000 false Chr11: 1246829-1256828 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123429170 5275 Viridiplantae View MSA
121346689 5274 Embryophyte View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.674        
cufflinks 0.786        
cufflinks 0.705        
cufflinks 0.774        
cufflinks 0.751        
cufflinks 0.948        
cufflinks 1.376       High
cufflinks 0.784        
cufflinks 0.203       Low
cufflinks 0.749        
cufflinks 0.853        
cufflinks 0.08       Low
cufflinks 0.74        
cufflinks 1.085        
cufflinks 0.079     Low Low
cufflinks 0.522        
cufflinks 0.768        
cufflinks 0.979        
cufflinks 0.805        
cufflinks 0.978        
cufflinks 0.229       Low
cufflinks 1.054        
cufflinks 0.862        
cufflinks 0.417        
cufflinks 0.692        
cufflinks 0.091       Low
cufflinks 1.207        
cufflinks 0.856        
cufflinks 0.444        
cufflinks 0.591        

0 Strain