Gene : Pp3c11_500 P. patens v3.3
Defline:  (1 of 2) PTHR24031:SF2 - ATP-DEPENDENT RNA HELICASE DDX55 Genomic Order:  20
Name:  ? Pp3c11_500 Secondary Identifier:  ? PAC:32959057
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0 Pathways

Genomics

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Expression

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c11_500 0.5kb upstream 0.5kb upstream 5674 true Chr11: 157024-162697 Physcomitrium patens
Pp3c11_500 0.5kb upstream 0.5kb upstream 500 false Chr11: 157024-157523 Physcomitrium patens
Pp3c11_500 0.5kb downstream 0.5kb downstream 5674 true Chr11: 157524-163197 Physcomitrium patens
Pp3c11_500 0.5kb downstream 0.5kb downstream 500 false Chr11: 162698-163197 Physcomitrium patens
Pp3c11_500 1.0kb upstream 1.0kb upstream 6174 true Chr11: 156524-162697 Physcomitrium patens
Pp3c11_500 1.0kb upstream 1.0kb upstream 1000 false Chr11: 156524-157523 Physcomitrium patens
Pp3c11_500 1.0kb downstream 1.0kb downstream 6174 true Chr11: 157524-163697 Physcomitrium patens
Pp3c11_500 1.0kb downstream 1.0kb downstream 1000 false Chr11: 162698-163697 Physcomitrium patens
Pp3c11_500 2.0kb upstream 2.0kb upstream 7174 true Chr11: 155524-162697 Physcomitrium patens
Pp3c11_500 2.0kb upstream 2.0kb upstream 2000 false Chr11: 155524-157523 Physcomitrium patens
Pp3c11_500 2.0kb downstream 2.0kb downstream 7174 true Chr11: 157524-164697 Physcomitrium patens
Pp3c11_500 2.0kb downstream 2.0kb downstream 2000 false Chr11: 162698-164697 Physcomitrium patens
Pp3c11_500 5.0kb upstream 5.0kb upstream 10174 true Chr11: 152524-162697 Physcomitrium patens
Pp3c11_500 5.0kb upstream 5.0kb upstream 5000 false Chr11: 152524-157523 Physcomitrium patens
Pp3c11_500 5.0kb downstream 5.0kb downstream 10174 true Chr11: 157524-167697 Physcomitrium patens
Pp3c11_500 5.0kb downstream 5.0kb downstream 5000 false Chr11: 162698-167697 Physcomitrium patens
Pp3c11_500 10.0kb upstream 10.0kb upstream 15174 true Chr11: 147524-162697 Physcomitrium patens
Pp3c11_500 10.0kb upstream 10.0kb upstream 10000 false Chr11: 147524-157523 Physcomitrium patens
Pp3c11_500 10.0kb downstream 10.0kb downstream 15174 true Chr11: 157524-172697 Physcomitrium patens
Pp3c11_500 10.0kb downstream 10.0kb downstream 10000 false Chr11: 162698-172697 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123429160 5275 Viridiplantae View MSA
121346858 5274 Embryophyte View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.007     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.003     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.003     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.002     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.002     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain