Gene : Pp3c12_14140 P. patens v3.3
Defline:  (1 of 1) PTHR16011 - IFT57/HIPPI Genomic Order:  628
Name:  ? Pp3c12_14140 Secondary Identifier:  ? PAC:32972220
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c12_14140 0.5kb upstream 0.5kb upstream 1796 true Chr12: 9447539-9449334 Physcomitrium patens
Pp3c12_14140 0.5kb upstream 0.5kb upstream 500 false Chr12: 9447539-9448038 Physcomitrium patens
Pp3c12_14140 0.5kb downstream 0.5kb downstream 1796 true Chr12: 9448039-9449834 Physcomitrium patens
Pp3c12_14140 0.5kb downstream 0.5kb downstream 500 false Chr12: 9449335-9449834 Physcomitrium patens
Pp3c12_14140 1.0kb upstream 1.0kb upstream 2296 true Chr12: 9447039-9449334 Physcomitrium patens
Pp3c12_14140 1.0kb upstream 1.0kb upstream 1000 false Chr12: 9447039-9448038 Physcomitrium patens
Pp3c12_14140 1.0kb downstream 1.0kb downstream 2296 true Chr12: 9448039-9450334 Physcomitrium patens
Pp3c12_14140 1.0kb downstream 1.0kb downstream 1000 false Chr12: 9449335-9450334 Physcomitrium patens
Pp3c12_14140 2.0kb upstream 2.0kb upstream 3296 true Chr12: 9446039-9449334 Physcomitrium patens
Pp3c12_14140 2.0kb upstream 2.0kb upstream 2000 false Chr12: 9446039-9448038 Physcomitrium patens
Pp3c12_14140 2.0kb downstream 2.0kb downstream 3296 true Chr12: 9448039-9451334 Physcomitrium patens
Pp3c12_14140 2.0kb downstream 2.0kb downstream 2000 false Chr12: 9449335-9451334 Physcomitrium patens
Pp3c12_14140 5.0kb upstream 5.0kb upstream 6296 true Chr12: 9443039-9449334 Physcomitrium patens
Pp3c12_14140 5.0kb upstream 5.0kb upstream 5000 false Chr12: 9443039-9448038 Physcomitrium patens
Pp3c12_14140 5.0kb downstream 5.0kb downstream 6296 true Chr12: 9448039-9454334 Physcomitrium patens
Pp3c12_14140 5.0kb downstream 5.0kb downstream 5000 false Chr12: 9449335-9454334 Physcomitrium patens
Pp3c12_14140 10.0kb upstream 10.0kb upstream 11296 true Chr12: 9438039-9449334 Physcomitrium patens
Pp3c12_14140 10.0kb upstream 10.0kb upstream 10000 false Chr12: 9438039-9448038 Physcomitrium patens
Pp3c12_14140 10.0kb downstream 10.0kb downstream 11296 true Chr12: 9448039-9459334 Physcomitrium patens
Pp3c12_14140 10.0kb downstream 10.0kb downstream 10000 false Chr12: 9449335-9459334 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121334364 5274 Embryophyte Singleton cluster - no MSA
123427173 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.022     Low  
cufflinks 0.017     Low  
cufflinks 0.031     Low  
cufflinks 0.038     Low High
cufflinks 0.012     Low  
cufflinks 0.004     Low Low
cufflinks 0.015     Low  
cufflinks 0.067     Low High
cufflinks 0.005     Low Low
cufflinks 0.016     Low  
cufflinks 0.02     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.005     Low Low
cufflinks 0.025     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.006     Low Low
cufflinks 0.039     Low High
cufflinks 0.009     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.006     Low Low
cufflinks 0.02     Low  
cufflinks 0.014     Low  
cufflinks 0.009     Low  
cufflinks 0.012     Low  
cufflinks 0.069     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.025     Low  
cufflinks 0.008     Low  
cufflinks 0.069     Low High

0 Strain