Gene : Pp3c12_25410 P. patens v3.3
Defline:  (1 of 1) PTHR10272:SF0 - PAF-1-RELATED Genomic Order:  1135
Name:  ? Pp3c12_25410 Secondary Identifier:  ? PAC:32975198
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

7 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c12_25410 0.5kb upstream 0.5kb upstream 4243 true Chr12: 16706292-16710534 Physcomitrium patens
Pp3c12_25410 0.5kb upstream 0.5kb upstream 500 false Chr12: 16706292-16706791 Physcomitrium patens
Pp3c12_25410 0.5kb downstream 0.5kb downstream 4243 true Chr12: 16706792-16711034 Physcomitrium patens
Pp3c12_25410 0.5kb downstream 0.5kb downstream 500 false Chr12: 16710535-16711034 Physcomitrium patens
Pp3c12_25410 1.0kb upstream 1.0kb upstream 4743 true Chr12: 16705792-16710534 Physcomitrium patens
Pp3c12_25410 1.0kb upstream 1.0kb upstream 1000 false Chr12: 16705792-16706791 Physcomitrium patens
Pp3c12_25410 1.0kb downstream 1.0kb downstream 4743 true Chr12: 16706792-16711534 Physcomitrium patens
Pp3c12_25410 1.0kb downstream 1.0kb downstream 1000 false Chr12: 16710535-16711534 Physcomitrium patens
Pp3c12_25410 2.0kb upstream 2.0kb upstream 5743 true Chr12: 16704792-16710534 Physcomitrium patens
Pp3c12_25410 2.0kb upstream 2.0kb upstream 2000 false Chr12: 16704792-16706791 Physcomitrium patens
Pp3c12_25410 2.0kb downstream 2.0kb downstream 5743 true Chr12: 16706792-16712534 Physcomitrium patens
Pp3c12_25410 2.0kb downstream 2.0kb downstream 2000 false Chr12: 16710535-16712534 Physcomitrium patens
Pp3c12_25410 5.0kb upstream 5.0kb upstream 8743 true Chr12: 16701792-16710534 Physcomitrium patens
Pp3c12_25410 5.0kb upstream 5.0kb upstream 5000 false Chr12: 16701792-16706791 Physcomitrium patens
Pp3c12_25410 5.0kb downstream 5.0kb downstream 8743 true Chr12: 16706792-16715534 Physcomitrium patens
Pp3c12_25410 5.0kb downstream 5.0kb downstream 5000 false Chr12: 16710535-16715534 Physcomitrium patens
Pp3c12_25410 10.0kb upstream 10.0kb upstream 13743 true Chr12: 16696792-16710534 Physcomitrium patens
Pp3c12_25410 10.0kb upstream 10.0kb upstream 10000 false Chr12: 16696792-16706791 Physcomitrium patens
Pp3c12_25410 10.0kb downstream 10.0kb downstream 13743 true Chr12: 16706792-16720534 Physcomitrium patens
Pp3c12_25410 10.0kb downstream 10.0kb downstream 10000 false Chr12: 16710535-16720534 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121342903 5274 Embryophyte View MSA
123379311 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.233        
cufflinks 0.112        
cufflinks 0.184        
cufflinks 0.362        
cufflinks 0.017     Low  
cufflinks 0.097        
cufflinks 0.2        
cufflinks 0.005     Low Low
cufflinks 0.353        
cufflinks 0.002     Low Low
cufflinks 0.579       High
cufflinks 0.25        
cufflinks 0.051     Low  
cufflinks 0.001     Low Low
cufflinks 0.035     Low  
cufflinks 0.234        
cufflinks 0.018     Low  
cufflinks 0.09        
cufflinks 0.108        
cufflinks 0.737       High
cufflinks 0.091        
cufflinks 0.02     Low  
cufflinks 0.049     Low  
cufflinks 0.758       High
cufflinks 0.242        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.001     Low Low
cufflinks 0.218        
cufflinks 0.084        
cufflinks 0.459       High

0 Strain