Gene : Pp3c12_26140 P. patens v3.3
Defline:  (1 of 68) PF01535 - PPR repeat (PPR) Genomic Order:  1164
Name:  ? Pp3c12_26140 Secondary Identifier:  ? PAC:32972894
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c12_26140 0.5kb upstream 0.5kb upstream 4459 true Chr12: 17280074-17284532 Physcomitrium patens
Pp3c12_26140 0.5kb upstream 0.5kb upstream 500 false Chr12: 17284033-17284532 Physcomitrium patens
Pp3c12_26140 0.5kb downstream 0.5kb downstream 4459 true Chr12: 17279574-17284032 Physcomitrium patens
Pp3c12_26140 0.5kb downstream 0.5kb downstream 500 false Chr12: 17279574-17280073 Physcomitrium patens
Pp3c12_26140 1.0kb upstream 1.0kb upstream 4959 true Chr12: 17280074-17285032 Physcomitrium patens
Pp3c12_26140 1.0kb upstream 1.0kb upstream 1000 false Chr12: 17284033-17285032 Physcomitrium patens
Pp3c12_26140 1.0kb downstream 1.0kb downstream 4959 true Chr12: 17279074-17284032 Physcomitrium patens
Pp3c12_26140 1.0kb downstream 1.0kb downstream 1000 false Chr12: 17279074-17280073 Physcomitrium patens
Pp3c12_26140 2.0kb upstream 2.0kb upstream 5959 true Chr12: 17280074-17286032 Physcomitrium patens
Pp3c12_26140 2.0kb upstream 2.0kb upstream 2000 false Chr12: 17284033-17286032 Physcomitrium patens
Pp3c12_26140 2.0kb downstream 2.0kb downstream 5959 true Chr12: 17278074-17284032 Physcomitrium patens
Pp3c12_26140 2.0kb downstream 2.0kb downstream 2000 false Chr12: 17278074-17280073 Physcomitrium patens
Pp3c12_26140 5.0kb upstream 5.0kb upstream 8959 true Chr12: 17280074-17289032 Physcomitrium patens
Pp3c12_26140 5.0kb upstream 5.0kb upstream 5000 false Chr12: 17284033-17289032 Physcomitrium patens
Pp3c12_26140 5.0kb downstream 5.0kb downstream 8959 true Chr12: 17275074-17284032 Physcomitrium patens
Pp3c12_26140 5.0kb downstream 5.0kb downstream 5000 false Chr12: 17275074-17280073 Physcomitrium patens
Pp3c12_26140 10.0kb upstream 10.0kb upstream 13959 true Chr12: 17280074-17294032 Physcomitrium patens
Pp3c12_26140 10.0kb upstream 10.0kb upstream 10000 false Chr12: 17284033-17294032 Physcomitrium patens
Pp3c12_26140 10.0kb downstream 10.0kb downstream 13959 true Chr12: 17270074-17284032 Physcomitrium patens
Pp3c12_26140 10.0kb downstream 10.0kb downstream 10000 false Chr12: 17270074-17280073 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121343077 5274 Embryophyte View MSA
123379424 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.257       Low
cufflinks 16.693        
cufflinks 9.781       Low
cufflinks 17.511        
cufflinks 21.079       High
cufflinks 6.783       Low
cufflinks 16.547        
cufflinks 14.313     High  
cufflinks 17.713        
cufflinks 16.255        
cufflinks 20.187     High High
cufflinks 10.357       Low
cufflinks 12.908        
cufflinks 8.022       Low
cufflinks 16.005        
cufflinks 15.231        
cufflinks 14.677        
cufflinks 11.89        
cufflinks 17.132        
cufflinks 10.979        
cufflinks 16.352        
cufflinks 16.486        
cufflinks 27.976     High High
cufflinks 15.976        
cufflinks 14.122        
cufflinks 16.082     High  
cufflinks 10.821        
cufflinks 15.571        
cufflinks 9.919       Low
cufflinks 11.025        

0 Strain