Gene : Pp3c12_22920 P. patens v3.3
Defline:  (1 of 3) KOG1509 - Predicted nucleic acid-binding protein ASMTL Genomic Order:  1008
Name:  ? Pp3c12_22920 Secondary Identifier:  ? PAC:32973533
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c12_22920 0.5kb upstream 0.5kb upstream 3484 true Chr12: 15176236-15179719 Physcomitrium patens
Pp3c12_22920 0.5kb upstream 0.5kb upstream 500 false Chr12: 15176236-15176735 Physcomitrium patens
Pp3c12_22920 0.5kb downstream 0.5kb downstream 3484 true Chr12: 15176736-15180219 Physcomitrium patens
Pp3c12_22920 0.5kb downstream 0.5kb downstream 500 false Chr12: 15179720-15180219 Physcomitrium patens
Pp3c12_22920 1.0kb upstream 1.0kb upstream 3984 true Chr12: 15175736-15179719 Physcomitrium patens
Pp3c12_22920 1.0kb upstream 1.0kb upstream 1000 false Chr12: 15175736-15176735 Physcomitrium patens
Pp3c12_22920 1.0kb downstream 1.0kb downstream 3984 true Chr12: 15176736-15180719 Physcomitrium patens
Pp3c12_22920 1.0kb downstream 1.0kb downstream 1000 false Chr12: 15179720-15180719 Physcomitrium patens
Pp3c12_22920 2.0kb upstream 2.0kb upstream 4984 true Chr12: 15174736-15179719 Physcomitrium patens
Pp3c12_22920 2.0kb upstream 2.0kb upstream 2000 false Chr12: 15174736-15176735 Physcomitrium patens
Pp3c12_22920 2.0kb downstream 2.0kb downstream 4984 true Chr12: 15176736-15181719 Physcomitrium patens
Pp3c12_22920 2.0kb downstream 2.0kb downstream 2000 false Chr12: 15179720-15181719 Physcomitrium patens
Pp3c12_22920 5.0kb upstream 5.0kb upstream 7984 true Chr12: 15171736-15179719 Physcomitrium patens
Pp3c12_22920 5.0kb upstream 5.0kb upstream 5000 false Chr12: 15171736-15176735 Physcomitrium patens
Pp3c12_22920 5.0kb downstream 5.0kb downstream 7984 true Chr12: 15176736-15184719 Physcomitrium patens
Pp3c12_22920 5.0kb downstream 5.0kb downstream 5000 false Chr12: 15179720-15184719 Physcomitrium patens
Pp3c12_22920 10.0kb upstream 10.0kb upstream 12984 true Chr12: 15166736-15179719 Physcomitrium patens
Pp3c12_22920 10.0kb upstream 10.0kb upstream 10000 false Chr12: 15166736-15176735 Physcomitrium patens
Pp3c12_22920 10.0kb downstream 10.0kb downstream 12984 true Chr12: 15176736-15189719 Physcomitrium patens
Pp3c12_22920 10.0kb downstream 10.0kb downstream 10000 false Chr12: 15179720-15189719 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121343603 5274 Embryophyte View MSA
123427064 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.615        
cufflinks 6.123        
cufflinks 6.281        
cufflinks 8.352       High
cufflinks 5.429        
cufflinks 3.572        
cufflinks 5.497        
cufflinks 2.189       Low
cufflinks 4.364        
cufflinks 7.32        
cufflinks 6.81        
cufflinks 5.155        
cufflinks 4.976        
cufflinks 7.853       High
cufflinks 2.177       Low
cufflinks 2.611       Low
cufflinks 5.42        
cufflinks 5.09        
cufflinks 4.192        
cufflinks 7.45        
cufflinks 6.598        
cufflinks 9.656       High
cufflinks 2.365       Low
cufflinks 7.225        
cufflinks 11.375       High
cufflinks 3.031       Low
cufflinks 4.18        
cufflinks 3.928        
cufflinks 4.182        
cufflinks 4.079        

0 Strain