Gene : Pp3c12_8550 P. patens v3.3
Defline:  (1 of 3) PTHR12399 - EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 Genomic Order:  349
Name:  ? Pp3c12_8550 Secondary Identifier:  ? PAC:32974252
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c12_8550 0.5kb upstream 0.5kb upstream 7312 true Chr12: 6077221-6084532 Physcomitrium patens
Pp3c12_8550 0.5kb upstream 0.5kb upstream 500 false Chr12: 6084033-6084532 Physcomitrium patens
Pp3c12_8550 0.5kb downstream 0.5kb downstream 7312 true Chr12: 6076721-6084032 Physcomitrium patens
Pp3c12_8550 0.5kb downstream 0.5kb downstream 500 false Chr12: 6076721-6077220 Physcomitrium patens
Pp3c12_8550 1.0kb upstream 1.0kb upstream 7812 true Chr12: 6077221-6085032 Physcomitrium patens
Pp3c12_8550 1.0kb upstream 1.0kb upstream 1000 false Chr12: 6084033-6085032 Physcomitrium patens
Pp3c12_8550 1.0kb downstream 1.0kb downstream 7812 true Chr12: 6076221-6084032 Physcomitrium patens
Pp3c12_8550 1.0kb downstream 1.0kb downstream 1000 false Chr12: 6076221-6077220 Physcomitrium patens
Pp3c12_8550 2.0kb upstream 2.0kb upstream 8812 true Chr12: 6077221-6086032 Physcomitrium patens
Pp3c12_8550 2.0kb upstream 2.0kb upstream 2000 false Chr12: 6084033-6086032 Physcomitrium patens
Pp3c12_8550 2.0kb downstream 2.0kb downstream 8812 true Chr12: 6075221-6084032 Physcomitrium patens
Pp3c12_8550 2.0kb downstream 2.0kb downstream 2000 false Chr12: 6075221-6077220 Physcomitrium patens
Pp3c12_8550 5.0kb upstream 5.0kb upstream 11812 true Chr12: 6077221-6089032 Physcomitrium patens
Pp3c12_8550 5.0kb upstream 5.0kb upstream 5000 false Chr12: 6084033-6089032 Physcomitrium patens
Pp3c12_8550 5.0kb downstream 5.0kb downstream 11812 true Chr12: 6072221-6084032 Physcomitrium patens
Pp3c12_8550 5.0kb downstream 5.0kb downstream 5000 false Chr12: 6072221-6077220 Physcomitrium patens
Pp3c12_8550 10.0kb upstream 10.0kb upstream 16812 true Chr12: 6077221-6094032 Physcomitrium patens
Pp3c12_8550 10.0kb upstream 10.0kb upstream 10000 false Chr12: 6084033-6094032 Physcomitrium patens
Pp3c12_8550 10.0kb downstream 10.0kb downstream 16812 true Chr12: 6067221-6084032 Physcomitrium patens
Pp3c12_8550 10.0kb downstream 10.0kb downstream 10000 false Chr12: 6067221-6077220 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121352111 5274 Embryophyte View MSA
123426210 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 56.487     High  
cufflinks 40.722     High  
cufflinks 13.034       Low
cufflinks 80.18     High  
cufflinks 112.105     High High
cufflinks 42.021     High  
cufflinks 27.296     High  
cufflinks 60.26     High  
cufflinks 19.137     High Low
cufflinks 156.872     High High
cufflinks 137.826     High High
cufflinks 78.672     High  
cufflinks 36.745     High  
cufflinks 67.156     High  
cufflinks 59.721     High  
cufflinks 45.015     High  
cufflinks 30.033     High  
cufflinks 72.294     High  
cufflinks 114.239     High High
cufflinks 52.007     High  
cufflinks 20.862     High Low
cufflinks 20.228     High Low
cufflinks 45.443     High  
cufflinks 14.317     High Low
cufflinks 42.115     High  
cufflinks 106.981     High High
cufflinks 7.719       Low
cufflinks 58.444     High  
cufflinks 42.099     High  
cufflinks 79.401     High  

0 Strain