Protein Domain : IPR012346

Type:  Domain Name:  p53/RUNT-type transcription factor, DNA-binding domain
Description:  This DNA-binding domain is found in the p53 and the RUNT families of transcription factors. The DNA-binding domain acts to clamp or encircle the DNA target in order to stabilise the protein-DNA complex. This domain has an immunoglobulin-like fold consisting of a beta-sandwich of 9 strands in two sheets with a Greek key topology []. The p53 tumour suppressor functions primarily as a sequence-specific transcription factor, but also has transcription-independent roles in DNA repair and recombination []. In addition, p53, as well as its family members p63 and p73, are involved in the survival/death checkpoint in peripheral and central neurons, where full-length proteins appear to be involved in cell death, and truncated isoforms that retain the DNA-binding domain are involved in cell survival [].RUNT domain (RD) proteins (also known as RUNX, AML, CBF-alpha and PEBP2-alpha) are a family of transcription factors involved in various developmental pathways. The RD has two general functions: it directs the binding of the protein to a target sequence, PyGPyGGTPy (Py=pyrimidine), in order to regulate the expression of target genes; and it mediates protein-protein interactions with CBF-beta which modulates the DNA-binding affinity of the RD []. Short Name:  p53/RUNT-type_TF_DNA-bd

3 Child Features

DB identifier Type Name
IPR013524 Domain Runt domain
IPR011615 Domain p53, DNA-binding domain
IPR015367 Domain Transcription factor CEP-1, DNA-binding domain

0 Contains

1 Cross References

Identifier
G3DSA:2.60.40.720

0 Found In

4 GO Annotations

GO Term Gene Name
GO:0003677 IPR012346
GO:0003700 IPR012346
GO:0006355 IPR012346
GO:0005634 IPR012346

4 Ontology Annotations

GO Term Gene Name
GO:0003677 IPR012346
GO:0003700 IPR012346
GO:0006355 IPR012346
GO:0005634 IPR012346

1 Parent Features

DB identifier Type Name
IPR008967 Domain p53-like transcription factor, DNA-binding

154 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
403105 D8QP24 PAC:15404766 Selaginella moellendorffii 119  
orange1.1g005666m A0A067FWJ9 PAC:18095443 Citrus sinensis 684  
orange1.1g010719m A0A067FK96 PAC:18095445 Citrus sinensis 503  
orange1.1g005674m A0A067FWJ9 PAC:18095444 Citrus sinensis 684  
orange1.1g014797m A0A067FNW7 PAC:18095446 Citrus sinensis 418  
Ciclev10030880m V4VAU4 PAC:20802555 Citrus clementina 684  
Glyma.19G080800.1.p I1N7I7 PAC:30511379 Glycine max 270  
Glyma.19G080800.2.p K7MX76 PAC:30511380 Glycine max 221  
Medtr5g059573.1 A0A072UE23 PAC:31090995 Medicago truncatula 116  
Medtr5g059563.1 A0A072UFY7 PAC:31086525 Medicago truncatula 116  
Medtr5g059475.1 A0A072UQA4 PAC:31087142 Medicago truncatula 116  
Medtr6g034995.1 A0A072U7V6 PAC:31105289 Medicago truncatula 152  
Medtr0077s0040.1 A0A072TTM9 PAC:31092363 Medicago truncatula 140  
SapurV1A.2595s0010.2.p PAC:31414077 Salix purpurea 479  
evm_27.model.AmTr_v1.0_scaffold00031.25 U5CTB6 PAC:31551864 Amborella trichopoda 73  
Traes_1DL_65529D8A6.1 PAC:31893303 Triticum aestivum 176  
Traes_2BL_B319D7DC3.1 PAC:31751445 Triticum aestivum 240  
Traes_2DL_D992459FF.1 PAC:31828799 Triticum aestivum 197  
Traes_2DL_D992459FF.2 PAC:31828798 Triticum aestivum 197  
Prupe.7G031600.1.p M5VTI2 PAC:32103235 Prunus persica 137  
GSMUA_Achr8P03070_001 PAC:32311808 Musa acuminata 114  
Manes.01G002000.1.p A0A2C9WGC7 PAC:32358561 Manihot esculenta 91  
Manes.15G005100.1.p A0A2C9UCS9 PAC:32350810 Manihot esculenta 584  
Pp3c6_24190V3.1.p A0A2K1KGY8 PAC:32978886 Physcomitrium patens 121  
Aco018969.1 PAC:33042333 Ananas comosus 61  
Aco028388.1 PAC:33033114 Ananas comosus 191  
Aqcoe5G474200.1.p A0A2G5CUM5 PAC:33084931 Aquilegia coerulea 176  
Brdisv1Tek-41002827m.p PAC:33480863 Brachypodium distachyon Tek-4 698  
Brdisv1ABR9_r1005357m.p PAC:33525686 Brachypodium distachyon ABR9 646  
Brdisv1ABR9_r1009733m.p PAC:33533231 Brachypodium distachyon ABR9 157  

4 Publications

First Author Title Year Journal Volume Pages PubMed ID
            15735333
            10545320
            15688066
            15359011