Protein Domain : IPR004217

Type:  Domain Name:  Tim10/DDP family zinc finger
Description:  Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis(African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc binding domain with four conserved cysteine residues. This domain is found in proteins such as Tim8A, Tim8B, Tim9 and Tim10, which are involved in mitochondrial protein import [] and seem to be localised to the mitochondrial intermembrane space. Defects in the Tim8A gene have been shown to be the cause of 2 human syndromes: Mohr-Tranebjaerg syndrome (MTS); also known as dystonia-deafness syndrome (DDS) or X-linked progressive deafness type 1 (DFN-1); and Jensen syndrome (JENSS); also known as opticoacoustic nerve atrophy with dementia. Short Name:  Tim10/DDP_fam_Znf

0 Child Features

0 Contains

3 Cross Referencess

Identifier
PF02953
G3DSA:1.10.287.810
SSF144122

0 Found In

0 GO Annotation

0 Ontology Annotations

0 Parent Features

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
106093 D8S102 PAC:15414948 Selaginella moellendorffii 70  
82076 D8R0F1 PAC:15408127 Selaginella moellendorffii 60  
422413 D8SIB4 PAC:15418675 Selaginella moellendorffii 579  
228905 D8SI96 PAC:15411481 Selaginella moellendorffii 81  
407013 D8R3M4 PAC:15415866 Selaginella moellendorffii 319  
74249 D8QP64 PAC:15408252 Selaginella moellendorffii 87  
403194 D8QTD6 PAC:15404988 Selaginella moellendorffii 529  
evm.model.supercontig_37.107 PAC:16418556 Carica papaya 92  
evm.model.supercontig_70.50 PAC:16425336 Carica papaya 91  
evm.model.supercontig_81.150 PAC:16426909 Carica papaya 93  
29751.m001818 B9S386 PAC:16807825 Ricinus communis 103  
29889.m003375 B9RZY4 PAC:16812321 Ricinus communis 135  
29977.m000254 B9T3N2 PAC:16814808 Ricinus communis 96  
30068.m002614 B9RYX8 PAC:16816621 Ricinus communis 88  
30128.m008644 B9REU0 PAC:16818234 Ricinus communis 78  
30147.m014442 B9RA98 PAC:16820452 Ricinus communis 78  
29644.m000183 B9T4U4 PAC:16804553 Ricinus communis 328  
Cucsa.175450.1 A0A0A0LFK3 PAC:16966755 Cucumis sativus 93  
Cucsa.146720.1 A0A0A0LVG1 PAC:16963959 Cucumis sativus 85  
Cucsa.146720.2 A0A0A0LVG1 PAC:16963960 Cucumis sativus 85  
Cucsa.157100.1 A0A0A0LTY7 PAC:16964941 Cucumis sativus 77  
Cucsa.193350.1 A0A0A0KK66 PAC:16968089 Cucumis sativus 87  
Cucsa.207470.1 PAC:16969239 Cucumis sativus 38  
Cucsa.244190.1 PAC:16971268 Cucumis sativus 74  
orange1.1g034780m A0A067FTH1 PAC:18111256 Citrus sinensis 84  
orange1.1g034922m A0A067FAR2 PAC:18117248 Citrus sinensis 78  
orange1.1g047434m A0A067G391 PAC:18097230 Citrus sinensis 93  
AT5G50810.1 Q9XGY4 PAC:19666844 Arabidopsis thaliana 77  
AT3G48209.1 A8MQ79 PAC:19664155 Arabidopsis thaliana 67  
AT3G46560.1 Q9XGX9 PAC:19659282 Arabidopsis thaliana 93  

7 Publications

First Author Title Year Journal Volume Pages PubMed ID
            12665246
            15718139
            17210253
            15963892
            10529348
            11179890
            11101512