Protein Domain : IPR009145

Type:  Family Name:  U2 auxiliary factor small subunit
Description:  The U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) is a heterodimeric splicing factor composed of a large and a small subunit. Thelarge U2AF subunit recognises the intronic polypyrimidine tract, a sequence located adjacent to the 3' splice site that serves as an importantsignal for both constitutive and regulated pre-mRNA splicing. The small subunit interacts with the 3' splice site dinucleotide AG and is essentialfor regulated splicing. The subunits shuttle continuously between the nucleus and the cytoplasm via a mechanism that involves carrier receptors and is independent of binding to mRNA. Both subunits contain an arginine/ serine-rich (RS) domain, which acts as a nuclear localisation signal.Furthermore, the presence of an RS domain on either subunit is sufficient to trigger the nucleocytoplasmic import of the heterodimeric complex.The human form of the U2 auxiliary factor small subunit, hU2AF35, contains a degenerate RNA recognition motif (RRM) and a C-terminal RS domain. Themurine form has been shown to be genomically imprinted with monoallelic expression from the paternal allele. However, this is not the case inhumans []. Short Name:  U2_small

0 Child Features

2 Contains

DB identifier Type Name
IPR000504 Domain RNA recognition motif domain
IPR000571 Domain Zinc finger, CCCH-type

2 Cross Referencess

Identifier
PTHR12620
PR01848

0 Found In

2 GO Annotations

GO Term Gene Name
GO:0003723 IPR009145
GO:0005634 IPR009145

2 Ontology Annotations

GO Term Gene Name
GO:0003723 IPR009145
GO:0005634 IPR009145

0 Parent Features

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
101529 D8RTF9 PAC:15403799 Selaginella moellendorffii 69  
18213 D8RTF8 PAC:15421305 Selaginella moellendorffii 56  
123490 D8SRU6 PAC:15423467 Selaginella moellendorffii 262  
77053 D8QRX9 PAC:15415655 Selaginella moellendorffii 132  
230014 D8QRA6 PAC:15410758 Selaginella moellendorffii 200  
evm.TU.contig_24967.7 PAC:16429380 Carica papaya 278  
evm.model.supercontig_173.41 PAC:16410996 Carica papaya 673  
evm.model.supercontig_47.49 PAC:16420653 Carica papaya 323  
29991.m000639 B9SN77 PAC:16815257 Ricinus communis 322  
30170.m013808 B9R8U8 PAC:16821653 Ricinus communis 272  
29092.m000448 B9SRG2 PAC:16802269 Ricinus communis 313  
29609.m000599 B9SPC8 PAC:16803628 Ricinus communis 857  
Cucsa.083100.3 PAC:16956374 Cucumis sativus 376  
Cucsa.083100.1 PAC:16956372 Cucumis sativus 376  
Cucsa.083100.2 PAC:16956373 Cucumis sativus 376  
Cucsa.272480.1 A0A0A0L4P8 PAC:16973727 Cucumis sativus 276  
Cucsa.114380.1 PAC:16960402 Cucumis sativus 271  
Cucsa.114390.1 PAC:16960403 Cucumis sativus 509  
Cucsa.200060.1 A0A0A0LVA4 PAC:16968734 Cucumis sativus 326  
orange1.1g044941m PAC:18098357 Citrus sinensis 202  
orange1.1g045807m A0A067F0U3 PAC:18100993 Citrus sinensis 320  
orange1.1g026083m A0A067DRZ5 PAC:18099856 Citrus sinensis 243  
orange1.1g027939m A0A067DS01 PAC:18099857 Citrus sinensis 216  
orange1.1g024141m A0A067DVL5 PAC:18099852 Citrus sinensis 272  
orange1.1g024094m A0A067DVL5 PAC:18099854 Citrus sinensis 272  
orange1.1g024142m A0A067DVL5 PAC:18099853 Citrus sinensis 272  
orange1.1g024601m A0A067DRG7 PAC:18099855 Citrus sinensis 265  
orange1.1g013314m PAC:18130210 Citrus sinensis 445  
orange1.1g040106m A0A067GZX8 PAC:18091403 Citrus sinensis 324  
AT5G42820.1 Q9FMY5 PAC:19668871 Arabidopsis thaliana 283  

1 Publications

First Author Title Year Journal Volume Pages PubMed ID
            8630064