Protein Domain : IPR011604

Type:  Domain Name:  Exonuclease, phage-type/RecB, C-terminal
Description:  This entry represents phage-type exonucleases () and the C-terminal domain of RecB exodeoxyribonuclease V exonuclease (), which are closely related in sequence and structure, containing a restriction enzyme-like core fold.Exonuclease from Bacteriophage lambdafacilitates phage DNA recombination through the double-strand break repair (DSBR) and single-strand annealing pathways; it is also important for the late, rolling-circle mode of lambda DNA replication. This magnesium-dependent enzyme catalyses the exonucleolytic cleavage of DNA in the 5'- to 3'-direction to yield nucleoside 5'-phosphates. Lamba exonuclease is a trimer of three subunits that form a toroid structure with a tapered channel passing through the middle [].Exodeoxyribonuclease V, or RecBCD holoenzyme, is a multifunctional nuclease with potent ATP-dependent exodeoxyribonuclease activity. Ejection of RecD, as occurs at chi recombinational hotspots, cripples exonuclease activity in favor of recombinagenic helicase activity. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologues) that function to generate substrates for the initiation of recombination and recombinational repair. The complex catalyses exonucleolytic cleavage in either the 5' to 3' or 3' to 5' direction to yield 5-phosphooligonucleotides in the presence of ATP []. Short Name:  Exonuc_phg/RecB_C

1 Child Features

DB identifier Type Name
IPR019080 Domain YqaJ viral recombinase

0 Contains

1 Cross References

Identifier
G3DSA:3.90.320.10

2 Found Ins

DB identifier Type Name
IPR004586 Family RecBCD enzyme subunit RecB
IPR016889 Family Uncharacterised conserved protein UCP028503

2 GO Annotations

GO Term Gene Name
GO:0003677 IPR011604
GO:0004518 IPR011604

2 Ontology Annotations

GO Term Gene Name
GO:0003677 IPR011604
GO:0004518 IPR011604

1 Parent Features

DB identifier Type Name
IPR011335 Domain Restriction endonuclease type II-like

865 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
418519 D8S5Z1 PAC:15407325 Selaginella moellendorffii 303  
403589 D8QRW2 PAC:15408001 Selaginella moellendorffii 359  
evm.model.supercontig_43.147 PAC:16419959 Carica papaya 323  
29929.m004705 B9RMK0 PAC:16813944 Ricinus communis 310  
30148.m001484 B9SDH4 PAC:16820628 Ricinus communis 317  
Cucsa.394810.1 PAC:16983256 Cucumis sativus 380  
Cucsa.394810.2 A0A0A0LNG4 PAC:16983257 Cucumis sativus 379  
Cucsa.079500.1 PAC:16956224 Cucumis sativus 288  
Cucsa.137640.1 PAC:16963228 Cucumis sativus 192  
orange1.1g021549m A0A067GQX6 PAC:18102439 Citrus sinensis 311  
orange1.1g019146m A0A067DVI9 PAC:18093890 Citrus sinensis 345  
AT3G55677.1 Q2V3P0 PAC:19659145 Arabidopsis thaliana 165  
AT1G13810.1 Q5XVK9 PAC:19651972 Arabidopsis thaliana 303  
AT1G67660.1 Q8GW93 PAC:19656454 Arabidopsis thaliana 355  
AT1G67660.2 F4HTP8 PAC:19656456 Arabidopsis thaliana 305  
AT1G67660.3 Q9FXD2 PAC:19656455 Arabidopsis thaliana 334  
Thhalv10008303m V4KVN9 PAC:20186045 Eutrema salsugineum 303  
Thhalv10008304m V4KVP8 PAC:20185293 Eutrema salsugineum 303  
Thhalv10018787m V4KBR4 PAC:20191987 Eutrema salsugineum 352  
Ciclev10031836m V4TIB1 PAC:20803335 Citrus clementina 379  
Ciclev10031987m V4SS59 PAC:20805257 Citrus clementina 345  
Lus10012108 PAC:23154953 Linum usitatissimum 129  
Lus10033589 PAC:23143377 Linum usitatissimum 529  
Lus10006437 PAC:23172002 Linum usitatissimum 114  
Lus10011377 PAC:23159193 Linum usitatissimum 114  
Lus10017632 PAC:23155531 Linum usitatissimum 286  
Lus10010434 PAC:23154151 Linum usitatissimum 351  
Potri.010G054800.1 B9HTC4 PAC:26981612 Populus trichocarpa 384  
Potri.018G058200.2 B9INH0 PAC:27009417 Populus trichocarpa 141  
Potri.018G058200.3 A0A2K1WWH2 PAC:27009415 Populus trichocarpa 142  

2 Publications

First Author Title Year Journal Volume Pages PubMed ID
            15538360
            9295273