Protein Domain : IPR003121

Type:  Domain Name:  SWIB/MDM2 domain
Description:  The SWI/SNF family of complexes, which are conserved from yeast to humans, are ATP-dependent chromatin-remodelling proteins that facilitate transcription activation []. The mammalian complexes are made up of 9-12 proteins called BAFs (BRG1-associated factors). The BAF60 family have at least three members: BAF60a, which is ubiquitous, BAF60b and BAF60c, which are expressed in muscle and pancreatic tissues, respectively. BAF60b is present in alternative forms of the SWI/SNF complex, including complex B (SWIB), which lacks BAF60a. The SWIB domain is a conserved region found within the BAF60b proteins [], and can be found fused to the C terminus of DNA topoisomerase in Chlamydia.MDM2 is an oncoprotein that acts as a cellular inhibitor of the p53 tumour suppressor by binding to the transactivation domain of p53 and suppressing its ability to activate transcription []. p53 acts in response to DNA damage, inducing cell cycle arrest and apoptosis. Inactivation of p53 is a common occurrence in neoplastic transformations. The core of MDM2 folds into an open bundle of four helices, which is capped by two small 3-stranded beta-sheets. It consists of a duplication of two structural repeats. MDM2 has a deep hydrophobic cleft on which the p53 alpha-helix binds; p53 residues involved in transactivation are buried deep within the cleft of MDM2, thereby concealing the p53 transactivation domain.The SWIB and MDM2 domains are homologous and share a common fold. Short Name:  SWIB_MDM2_domain

1 Child Features

DB identifier Type Name
IPR019835 Domain SWIB domain

0 Contains

3 Cross Referencess

Identifier
PF02201
G3DSA:1.10.245.10
SSF47592

3 Found Ins

DB identifier Type Name
IPR016495 Family p53 negative regulator Mdm2/Mdm4
IPR015458 Family MDM4
IPR015459 Family Ubiquitin-protein ligase E3 MDM2

1 GO Annotation

GO Term Gene Name
GO:0005515 IPR003121

1 Ontology Annotations

GO Term Gene Name
GO:0005515 IPR003121

0 Parent Features

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
176439 D8S2Z3 PAC:15423445 Selaginella moellendorffii 342  
418723 D8S6Y5 PAC:15408957 Selaginella moellendorffii 292  
59520 D8S8M9 PAC:15410853 Selaginella moellendorffii 79  
121478 D8SNZ3 PAC:15417696 Selaginella moellendorffii 311  
49450 D8SSD5 PAC:15402839 Selaginella moellendorffii 71  
43289 D8T2I9 PAC:15406191 Selaginella moellendorffii 397  
77083 D8QTI8 PAC:15415718 Selaginella moellendorffii 610  
evm.TU.contig_42255.1 PAC:16431713 Carica papaya 39  
evm.model.supercontig_1176.2 PAC:16406461 Carica papaya 169  
evm.model.supercontig_12.29 PAC:16406847 Carica papaya 454  
evm.model.supercontig_13.130 PAC:16407637 Carica papaya 533  
evm.model.supercontig_13.247 PAC:16407766 Carica papaya 383  
evm.model.supercontig_142.12 PAC:16408939 Carica papaya 605  
evm.model.supercontig_150.24 PAC:16409477 Carica papaya 472  
evm.model.supercontig_171.24 PAC:16410909 Carica papaya 254  
evm.model.supercontig_200.3 PAC:16413152 Carica papaya 108  
evm.model.supercontig_284.9 PAC:16416066 Carica papaya 100  
evm.model.supercontig_6.213 PAC:16423391 Carica papaya 1073  
evm.model.supercontig_60.74 PAC:16423767 Carica papaya 85  
evm.model.supercontig_62.52 PAC:16424015 Carica papaya 472  
evm.model.supercontig_73.28 PAC:16425605 Carica papaya 179  
evm.model.supercontig_75.114 PAC:16425834 Carica papaya 396  
evm.model.supercontig_86.38 PAC:16427590 Carica papaya 499  
29724.m000827 B9S3I9 PAC:16806556 Ricinus communis 397  
29780.m001322 B9S770 PAC:16808354 Ricinus communis 614  
29780.m001354 B9S7A2 PAC:16808386 Ricinus communis 572  
29801.m003069 B9RY66 PAC:16808919 Ricinus communis 141  
29804.m001504 B9RX32 PAC:16809122 Ricinus communis 149  
29910.m000952 B9SBV7 PAC:16813139 Ricinus communis 616  
30148.m001413 B9SDA4 PAC:16820558 Ricinus communis 134  

3 Publications

First Author Title Year Journal Volume Pages PubMed ID
            8875929
            11147808
            12016060