Protein Domain : IPR010280

Type:  Family Name:  (Uracil-5)-methyltransferase family
Description:  This family consists of (uracil-5-)-methyltransferases from bacteria, archaea and eukaryotes.A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiaeis encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity [].This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia colihas now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA []. Short Name:  U5_MeTrfase_fam

4 Child Features

DB identifier Type Name
IPR001566 Family 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
IPR011869 Family tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA
IPR011825 Family 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC
IPR025795 Family tRNA (uracil-5-)-methyltransferase

0 Contains

2 Cross Referencess

Identifier
PF05958
PS51687

0 Found In

2 GO Annotations

GO Term Gene Name
GO:0008173 IPR010280
GO:0006396 IPR010280

2 Ontology Annotations

GO Term Gene Name
GO:0008173 IPR010280
GO:0006396 IPR010280

0 Parent Features

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
448841 D8TAK6 PAC:15409052 Selaginella moellendorffii 446  
77358 D8QTH9 PAC:15417877 Selaginella moellendorffii 444  
440228 D8R9C1 PAC:15403309 Selaginella moellendorffii 650  
170457 D8RD96 PAC:15405991 Selaginella moellendorffii 536  
evm.model.supercontig_131.17 PAC:16408009 Carica papaya 323  
evm.model.supercontig_171.27 PAC:16410912 Carica papaya 501  
evm.model.supercontig_898.4 PAC:16427975 Carica papaya 833  
30146.m003439 B9RQ77 PAC:16819561 Ricinus communis 577  
30190.m010946 B9RBJ8 PAC:16823309 Ricinus communis 518  
28076.m000420 B9SWC0 PAC:16799877 Ricinus communis 863  
Cucsa.386140.1 PAC:16982696 Cucumis sativus 889  
Cucsa.386140.2 PAC:16982697 Cucumis sativus 817  
Cucsa.054220.1 PAC:16954399 Cucumis sativus 400  
Cucsa.360750.1 A0A0A0KB04 PAC:16980801 Cucumis sativus 562  
Cucsa.360750.2 PAC:16980802 Cucumis sativus 493  
Cucsa.360750.3 PAC:16980803 Cucumis sativus 432  
orange1.1g043853m PAC:18103630 Citrus sinensis 222  
orange1.1g044572m A0A067DXH4 PAC:18130499 Citrus sinensis 457  
orange1.1g002990m PAC:18097528 Citrus sinensis 860  
orange1.1g003969m PAC:18097529 Citrus sinensis 783  
AT3G21300.1 Q9LU28 PAC:19660768 Arabidopsis thaliana 554  
AT3G27180.1 B3DNP3 PAC:19659012 Arabidopsis thaliana 518  
AT2G28450.2 F4IIP9 PAC:19640730 Arabidopsis thaliana 804  
AT2G28450.1 Q8L7S3 PAC:19640729 Arabidopsis thaliana 809  
Thhalv10016347m V4MFK2 PAC:20179802 Eutrema salsugineum 678  
Thhalv10020447m V4LV75 PAC:20183506 Eutrema salsugineum 549  
Thhalv10003965m V4KRX3 PAC:20199990 Eutrema salsugineum 539  
Ciclev10027798m V4SG79 PAC:20814380 Citrus clementina 860  
Ciclev10025277m V4SRG3 PAC:20801251 Citrus clementina 567  
Ciclev10025474m V4SLH8 PAC:20801252 Citrus clementina 489  

2 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11779873
            12003492