Protein Domain : IPR001780

Type:  Family Name:  Ribosomal protein L35A
Description:  Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ].The ribosomal L35A eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of: Vertebrate L35A.Caenorhabditis elegansL35A (F10E7.7).Saccharomyces cerevisiaeL37A/L37B (Rp47).Plant L35A.Pyrococcus woeseiL35A homologue [].These proteins have 87 to 110 amino-acid residues. Short Name:  Ribosomal_L35A

1 Child Features

DB identifier Type Name
IPR023518 Family Ribosomal protein L35Ae, archaeal

1 Contains

DB identifier Type Name
IPR018266 Conserved_site Ribosomal protein L35Ae, conserved site

3 Cross Referencess

Identifier
PTHR10902
PF01247
PD012670

0 Found In

4 GO Annotations

GO Term Gene Name
GO:0003735 IPR001780
GO:0006412 IPR001780
GO:0005622 IPR001780
GO:0005840 IPR001780

4 Ontology Annotations

GO Term Gene Name
GO:0003735 IPR001780
GO:0006412 IPR001780
GO:0005622 IPR001780
GO:0005840 IPR001780

0 Parent Features

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
134155 D8T853 PAC:15408924 Selaginella moellendorffii 102  
184773 D8T294 PAC:15404851 Selaginella moellendorffii 109  
evm.model.supercontig_19.232 PAC:16411975 Carica papaya 112  
evm.model.supercontig_56.99 PAC:16422812 Carica papaya 112  
29610.m000399 B9SWN8 PAC:16803653 Ricinus communis 112  
27798.m000595 B9SPF5 PAC:16799212 Ricinus communis 112  
Cucsa.357640.1 PAC:16980443 Cucumis sativus 112  
Cucsa.357640.2 PAC:16980444 Cucumis sativus 112  
Cucsa.357640.3 PAC:16980445 Cucumis sativus 112  
Cucsa.357640.4 PAC:16980446 Cucumis sativus 112  
Cucsa.357640.5 PAC:16980447 Cucumis sativus 92  
Cucsa.164670.1 PAC:16965895 Cucumis sativus 134  
Cucsa.164670.3 A0A0A0KM11 PAC:16965897 Cucumis sativus 112  
Cucsa.164670.2 A0A0A0KM11 PAC:16965896 Cucumis sativus 112  
orange1.1g042762m A0A067DPD4 PAC:18117108 Citrus sinensis 96  
orange1.1g033724m A0A067FPF2 PAC:18138075 Citrus sinensis 112  
orange1.1g033755m A0A067FPF2 PAC:18138074 Citrus sinensis 112  
orange1.1g044692m A0A067FSG8 PAC:18122884 Citrus sinensis 61  
orange1.1g033764m A0A067EVS1 PAC:18103868 Citrus sinensis 112  
orange1.1g040909m A0A067EDF7 PAC:18116073 Citrus sinensis 98  
AT3G55750.1 P51422 PAC:19659627 Arabidopsis thaliana 111  
AT1G07070.1 Q9LMK0 PAC:19652225 Arabidopsis thaliana 112  
AT1G41880.1 Q9FZH0 PAC:19654231 Arabidopsis thaliana 111  
AT1G74270.1 Q9C912 PAC:19654744 Arabidopsis thaliana 112  
Thhalv10021832m V4LBH8 PAC:20181526 Eutrema salsugineum 96  
Thhalv10010844m V4L3I2 PAC:20206931 Eutrema salsugineum 111  
Thhalv10009155m V4MVI5 PAC:20188488 Eutrema salsugineum 112  
Thhalv10019342m V4K9K7 PAC:20192000 Eutrema salsugineum 112  
Ciclev10003325m V4T0I7 PAC:20787810 Citrus clementina 96  
Ciclev10003310m V4SXI4 PAC:20786388 Citrus clementina 98  

4 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11297922
            11290319
            11114498
            7899076