Protein Domain : IPR005484

Type:  Family Name:  Ribosomal protein L18/L5
Description:  Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ].This family includes L18 from bacteria and L5 from eukaryotes. The ribosomal 5S RNA is the only known rRNA species to bind a ribosomal protein before its assembly into theribosomal subunits []. In eukaryotes, the 5S rRNA molecule binds one protein species, a 34kDa protein which has been implicated in the intracellular transport of 5 S rRNA, while in bacteria it bindstwo or three different protein species []. Short Name:  Ribosomal_L18/L5

2 Child Features

DB identifier Type Name
IPR004389 Family Ribosomal protein L18, bacterial-type
IPR005485 Family Ribosomal protein L5 eukaryotic/L18 archaeal

0 Contains

1 Cross References

Identifier
PF00861

0 Found In

4 GO Annotations

GO Term Gene Name
GO:0003735 IPR005484
GO:0006412 IPR005484
GO:0005622 IPR005484
GO:0005840 IPR005484

4 Ontology Annotations

GO Term Gene Name
GO:0003735 IPR005484
GO:0006412 IPR005484
GO:0005622 IPR005484
GO:0005840 IPR005484

0 Parent Features

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
96295 D8RM72 PAC:15406339 Selaginella moellendorffii 132  
68956 D8QWH9 PAC:15418223 Selaginella moellendorffii 107  
80094 D8QWH8 PAC:15402360 Selaginella moellendorffii 129  
143891 D8R650 PAC:15418711 Selaginella moellendorffii 112  
130450 D8T2L7 PAC:15421800 Selaginella moellendorffii 93  
144921 D8R9P8 PAC:15422101 Selaginella moellendorffii 296  
49732 D8T330 PAC:15405089 Selaginella moellendorffii 86  
evm.model.supercontig_128.36 PAC:16407460 Carica papaya 169  
evm.model.supercontig_146.3 PAC:16409118 Carica papaya 154  
evm.model.supercontig_327.8 PAC:16417522 Carica papaya 114  
evm.model.supercontig_343.5 PAC:16418074 Carica papaya 297  
evm.model.supercontig_37.137 PAC:16418589 Carica papaya 353  
evm.model.supercontig_504.4 PAC:16421740 Carica papaya 151  
evm.model.supercontig_66.18 PAC:16424579 Carica papaya 300  
evm.model.supercontig_94.2 PAC:16428755 Carica papaya 169  
29747.m001054 B9SFU0 PAC:16807720 Ricinus communis 299  
29813.m001498 B9S8X7 PAC:16809458 Ricinus communis 164  
29844.m003287 B9RTR6 PAC:16810994 Ricinus communis 140  
29967.m000086 B9T5R2 PAC:16814611 Ricinus communis 186  
30005.m001241 B9SEY9 PAC:16815474 Ricinus communis 298  
30128.m008847 B9RFC9 PAC:16818433 Ricinus communis 115  
30190.m010785 B9RCM8 PAC:16823153 Ricinus communis 164  
27797.m000015 B9T8N7 PAC:16799196 Ricinus communis 188  
29589.m001233 B9SCH7 PAC:16803274 Ricinus communis 129  
Cucsa.133660.1 A0A0A0LLI4 PAC:16962761 Cucumis sativus 187  
Cucsa.158020.1 A0A0A0KSG6 PAC:16965063 Cucumis sativus 334  
Cucsa.169840.1 A0A0A0L0Z6 PAC:16966416 Cucumis sativus 114  
Cucsa.075890.1 A0A0A0KRY8 PAC:16955786 Cucumis sativus 302  
Cucsa.252040.1 A0A0A0L9A4 PAC:16971891 Cucumis sativus 170  
Cucsa.257030.1 PAC:16972646 Cucumis sativus 186  

5 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11297922
            11290319
            11114498
            8474444
            8219074