Protein Domain : IPR000589

Type:  Family Name:  Ribosomal protein S15
Description:  Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ].Ribosomal protein S15 is one of the proteins from the small ribosomal subunit. In Escherichia coli, this protein binds to 16S ribosomal RNA and functions at early steps in ribosome assembly. It belongs to a family of ribosomal proteinswhich, on the basis of sequence similarities [,], groups bacterial and plant chloroplast S15;archaeal Haloarcula marismortuiHmaS15 (HS11); yeast mitochondrial S28; and mammalian, yeast, Brugia pahangiand Wuchereria bancroftiS13. S15 is a protein of 80 to 250 amino-acid residues. Short Name:  Ribosomal_S15

2 Child Features

DB identifier Type Name
IPR005290 Family Ribosomal protein S15, bacterial-type
IPR023029 Family Ribosomal protein S15P

1 Contains

DB identifier Type Name
IPR009068 Domain S15/NS1, RNA-binding

2 Cross Referencess

Identifier
PF00312
PS00362

0 Found In

4 GO Annotations

GO Term Gene Name
GO:0003735 IPR000589
GO:0006412 IPR000589
GO:0005622 IPR000589
GO:0005840 IPR000589

4 Ontology Annotations

GO Term Gene Name
GO:0003735 IPR000589
GO:0006412 IPR000589
GO:0005622 IPR000589
GO:0005840 IPR000589

0 Parent Features

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
39422 D8S0X8 PAC:15417962 Selaginella moellendorffii 69  
444084 D8S6C0 PAC:15413769 Selaginella moellendorffii 322  
440805 D8REI3 PAC:15407822 Selaginella moellendorffii 151  
evm.model.supercontig_10.123 PAC:16404475 Carica papaya 446  
evm.model.supercontig_29.94 PAC:16416307 Carica papaya 151  
evm.model.supercontig_3.282 PAC:16416571 Carica papaya 151  
30174.m008862 B9RDA6 PAC:16822507 Ricinus communis 151  
27446.m000473 B9SWS4 PAC:16798333 Ricinus communis 461  
Cucsa.320490.1 A0A0A0L5N6 PAC:16977356 Cucumis sativus 151  
Cucsa.362740.1 A0A0A0KEP4 PAC:16980974 Cucumis sativus 151  
Cucsa.096170.1 A0A0A0KVK2 PAC:16957994 Cucumis sativus 449  
Cucsa.302270.1 A0A0A0KMS8 PAC:16975734 Cucumis sativus 151  
Cucsa.328640.1 PAC:16978183 Cucumis sativus 102  
orange1.1g031857m A0A067FDB2 PAC:18127912 Citrus sinensis 151  
orange1.1g032468m A0A067FGX6 PAC:18127913 Citrus sinensis 140  
orange1.1g013758m A0A067DVI7 PAC:18129550 Citrus sinensis 437  
orange1.1g031854m A0A067HD38 PAC:18137306 Citrus sinensis 152  
AT3G60770.1 P59223 PAC:19664569 Arabidopsis thaliana 151  
AT4G00100.1 P59224 PAC:19648396 Arabidopsis thaliana 151  
ATCG01120.1 P56805 PAC:19638016 Arabidopsis thaliana 88  
AT1G15810.1 Q9LMQ3 PAC:19654076 Arabidopsis thaliana 419  
AT1G80620.1 Q9M8M9 PAC:19654301 Arabidopsis thaliana 414  
Thhalv10006293m V4NDD6 PAC:20190293 Eutrema salsugineum 151  
Thhalv10001670m V4L9X0 PAC:20189245 Eutrema salsugineum 151  
Thhalv10029042m V4MYL5 PAC:20197626 Eutrema salsugineum 151  
Thhalv10007635m V4KV72 PAC:20186912 Eutrema salsugineum 445  
Thhalv10018593m V4KBK1 PAC:20192570 Eutrema salsugineum 431  
Ciclev10022677m PAC:20807834 Citrus clementina 151  
Ciclev10025627m V4SJG8 PAC:20801311 Citrus clementina 437  
Ciclev10006145m PAC:20790323 Citrus clementina 151  

4 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11297922
            11290319
            11114498
            2263452