Gene : LOC_Os04g16872 O. sativa v7.0
Defline:  (1 of 3) K02706 - photosystem II P680 reaction center D2 protein (psbD) Genomic Order:  767
Name:  ? LOC_Os04g16872 Secondary Identifier:  ? PAC:33110606
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Osativa PHOTOALL-PWY Oryza sativa pathologic  
Osativa PWY-101 Oryza sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
LOC_Os04g16872 0.5kb upstream 0.5kb upstream 1580 true Chr4: 9175855-9177434 Oryza sativa
LOC_Os04g16872 0.5kb upstream 0.5kb upstream 500 false Chr4: 9175855-9176354 Oryza sativa
LOC_Os04g16872 0.5kb downstream 0.5kb downstream 1580 true Chr4: 9176355-9177934 Oryza sativa
LOC_Os04g16872 0.5kb downstream 0.5kb downstream 500 false Chr4: 9177435-9177934 Oryza sativa
LOC_Os04g16872 1.0kb upstream 1.0kb upstream 2080 true Chr4: 9175355-9177434 Oryza sativa
LOC_Os04g16872 1.0kb upstream 1.0kb upstream 1000 false Chr4: 9175355-9176354 Oryza sativa
LOC_Os04g16872 1.0kb downstream 1.0kb downstream 2080 true Chr4: 9176355-9178434 Oryza sativa
LOC_Os04g16872 1.0kb downstream 1.0kb downstream 1000 false Chr4: 9177435-9178434 Oryza sativa
LOC_Os04g16872 2.0kb upstream 2.0kb upstream 3080 true Chr4: 9174355-9177434 Oryza sativa
LOC_Os04g16872 2.0kb upstream 2.0kb upstream 2000 false Chr4: 9174355-9176354 Oryza sativa
LOC_Os04g16872 2.0kb downstream 2.0kb downstream 3080 true Chr4: 9176355-9179434 Oryza sativa
LOC_Os04g16872 2.0kb downstream 2.0kb downstream 2000 false Chr4: 9177435-9179434 Oryza sativa
LOC_Os04g16872 5.0kb upstream 5.0kb upstream 6080 true Chr4: 9171355-9177434 Oryza sativa
LOC_Os04g16872 5.0kb upstream 5.0kb upstream 5000 false Chr4: 9171355-9176354 Oryza sativa
LOC_Os04g16872 5.0kb downstream 5.0kb downstream 6080 true Chr4: 9176355-9182434 Oryza sativa
LOC_Os04g16872 5.0kb downstream 5.0kb downstream 5000 false Chr4: 9177435-9182434 Oryza sativa
LOC_Os04g16872 10.0kb upstream 10.0kb upstream 11080 true Chr4: 9166355-9177434 Oryza sativa
LOC_Os04g16872 10.0kb upstream 10.0kb upstream 10000 false Chr4: 9166355-9176354 Oryza sativa
LOC_Os04g16872 10.0kb downstream 10.0kb downstream 11080 true Chr4: 9176355-9187434 Oryza sativa
LOC_Os04g16872 10.0kb downstream 10.0kb downstream 10000 false Chr4: 9177435-9187434 Oryza sativa

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124586576 5269 Grass View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain