Gene : LOC_Os04g16770 O. sativa v7.0
Defline:  (1 of 3) K02703 - photosystem II P680 reaction center D1 protein (psbA) Genomic Order:  742
Name:  ? LOC_Os04g16770 Secondary Identifier:  ? PAC:33108522
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Osativa PHOTOALL-PWY Oryza sativa pathologic  
Osativa PWY-101 Oryza sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
LOC_Os04g16770 0.5kb upstream 0.5kb upstream 1668 true Chr4: 9135621-9137288 Oryza sativa
LOC_Os04g16770 0.5kb upstream 0.5kb upstream 500 false Chr4: 9135621-9136120 Oryza sativa
LOC_Os04g16770 0.5kb downstream 0.5kb downstream 1668 true Chr4: 9136121-9137788 Oryza sativa
LOC_Os04g16770 0.5kb downstream 0.5kb downstream 500 false Chr4: 9137289-9137788 Oryza sativa
LOC_Os04g16770 1.0kb upstream 1.0kb upstream 2168 true Chr4: 9135121-9137288 Oryza sativa
LOC_Os04g16770 1.0kb upstream 1.0kb upstream 1000 false Chr4: 9135121-9136120 Oryza sativa
LOC_Os04g16770 1.0kb downstream 1.0kb downstream 2168 true Chr4: 9136121-9138288 Oryza sativa
LOC_Os04g16770 1.0kb downstream 1.0kb downstream 1000 false Chr4: 9137289-9138288 Oryza sativa
LOC_Os04g16770 2.0kb upstream 2.0kb upstream 3168 true Chr4: 9134121-9137288 Oryza sativa
LOC_Os04g16770 2.0kb upstream 2.0kb upstream 2000 false Chr4: 9134121-9136120 Oryza sativa
LOC_Os04g16770 2.0kb downstream 2.0kb downstream 3168 true Chr4: 9136121-9139288 Oryza sativa
LOC_Os04g16770 2.0kb downstream 2.0kb downstream 2000 false Chr4: 9137289-9139288 Oryza sativa
LOC_Os04g16770 5.0kb upstream 5.0kb upstream 6168 true Chr4: 9131121-9137288 Oryza sativa
LOC_Os04g16770 5.0kb upstream 5.0kb upstream 5000 false Chr4: 9131121-9136120 Oryza sativa
LOC_Os04g16770 5.0kb downstream 5.0kb downstream 6168 true Chr4: 9136121-9142288 Oryza sativa
LOC_Os04g16770 5.0kb downstream 5.0kb downstream 5000 false Chr4: 9137289-9142288 Oryza sativa
LOC_Os04g16770 10.0kb upstream 10.0kb upstream 11168 true Chr4: 9126121-9137288 Oryza sativa
LOC_Os04g16770 10.0kb upstream 10.0kb upstream 10000 false Chr4: 9126121-9136120 Oryza sativa
LOC_Os04g16770 10.0kb downstream 10.0kb downstream 11168 true Chr4: 9136121-9147288 Oryza sativa
LOC_Os04g16770 10.0kb downstream 10.0kb downstream 10000 false Chr4: 9137289-9147288 Oryza sativa

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124586576 5269 Grass View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain