Gene : LOC_Os05g41880 O. sativa v7.0
Defline:  (1 of 1) K08741 - DNA mismatch repair protein MSH5 (MSH5) Genomic Order:  2587
Name:  ? LOC_Os05g41880 Secondary Identifier:  ? PAC:33159972
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Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Osativa PWY1F-823 Oryza sativa pathologic  
Osativa PWY-3101 Oryza sativa pathologic  
Osativa PWY-5060 Oryza sativa pathologic  
Osativa PWY-5152 Oryza sativa pathologic  
Osativa PWY-5391 Oryza sativa pathologic  
Osativa PWY-6787 Oryza sativa pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
LOC_Os05g41880 0.5kb upstream 0.5kb upstream 9896 true Chr5: 24522395-24532290 Oryza sativa
LOC_Os05g41880 0.5kb upstream 0.5kb upstream 500 false Chr5: 24522395-24522894 Oryza sativa
LOC_Os05g41880 0.5kb downstream 0.5kb downstream 9896 true Chr5: 24522895-24532790 Oryza sativa
LOC_Os05g41880 0.5kb downstream 0.5kb downstream 500 false Chr5: 24532291-24532790 Oryza sativa
LOC_Os05g41880 1.0kb upstream 1.0kb upstream 10396 true Chr5: 24521895-24532290 Oryza sativa
LOC_Os05g41880 1.0kb upstream 1.0kb upstream 1000 false Chr5: 24521895-24522894 Oryza sativa
LOC_Os05g41880 1.0kb downstream 1.0kb downstream 10396 true Chr5: 24522895-24533290 Oryza sativa
LOC_Os05g41880 1.0kb downstream 1.0kb downstream 1000 false Chr5: 24532291-24533290 Oryza sativa
LOC_Os05g41880 2.0kb upstream 2.0kb upstream 11396 true Chr5: 24520895-24532290 Oryza sativa
LOC_Os05g41880 2.0kb upstream 2.0kb upstream 2000 false Chr5: 24520895-24522894 Oryza sativa
LOC_Os05g41880 2.0kb downstream 2.0kb downstream 11396 true Chr5: 24522895-24534290 Oryza sativa
LOC_Os05g41880 2.0kb downstream 2.0kb downstream 2000 false Chr5: 24532291-24534290 Oryza sativa
LOC_Os05g41880 5.0kb upstream 5.0kb upstream 14396 true Chr5: 24517895-24532290 Oryza sativa
LOC_Os05g41880 5.0kb upstream 5.0kb upstream 5000 false Chr5: 24517895-24522894 Oryza sativa
LOC_Os05g41880 5.0kb downstream 5.0kb downstream 14396 true Chr5: 24522895-24537290 Oryza sativa
LOC_Os05g41880 5.0kb downstream 5.0kb downstream 5000 false Chr5: 24532291-24537290 Oryza sativa
LOC_Os05g41880 10.0kb upstream 10.0kb upstream 19396 true Chr5: 24512895-24532290 Oryza sativa
LOC_Os05g41880 10.0kb upstream 10.0kb upstream 10000 false Chr5: 24512895-24522894 Oryza sativa
LOC_Os05g41880 10.0kb downstream 10.0kb downstream 19396 true Chr5: 24522895-24542290 Oryza sativa
LOC_Os05g41880 10.0kb downstream 10.0kb downstream 10000 false Chr5: 24532291-24542290 Oryza sativa

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124588851 5269 Grass View MSA
122042085 5273 Angiosperm View MSA
121347991 5274 Embryophyte View MSA
123423769 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain