Gene : LOC_Os08g05490 O. sativa v7.0
Defline:  (1 of 3) PTHR11946:SF53 - TYROSINE-TRNA LIGASE Genomic Order:  358
Name:  ? LOC_Os08g05490 Secondary Identifier:  ? PAC:33103266
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Osativa TRNA-CHARGING-PWY Oryza sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
LOC_Os08g05490 0.5kb upstream 0.5kb upstream 4821 true Chr8: 2923693-2928513 Oryza sativa
LOC_Os08g05490 0.5kb upstream 0.5kb upstream 500 false Chr8: 2923693-2924192 Oryza sativa
LOC_Os08g05490 0.5kb downstream 0.5kb downstream 4821 true Chr8: 2924193-2929013 Oryza sativa
LOC_Os08g05490 0.5kb downstream 0.5kb downstream 500 false Chr8: 2928514-2929013 Oryza sativa
LOC_Os08g05490 1.0kb upstream 1.0kb upstream 5321 true Chr8: 2923193-2928513 Oryza sativa
LOC_Os08g05490 1.0kb upstream 1.0kb upstream 1000 false Chr8: 2923193-2924192 Oryza sativa
LOC_Os08g05490 1.0kb downstream 1.0kb downstream 5321 true Chr8: 2924193-2929513 Oryza sativa
LOC_Os08g05490 1.0kb downstream 1.0kb downstream 1000 false Chr8: 2928514-2929513 Oryza sativa
LOC_Os08g05490 2.0kb upstream 2.0kb upstream 6321 true Chr8: 2922193-2928513 Oryza sativa
LOC_Os08g05490 2.0kb upstream 2.0kb upstream 2000 false Chr8: 2922193-2924192 Oryza sativa
LOC_Os08g05490 2.0kb downstream 2.0kb downstream 6321 true Chr8: 2924193-2930513 Oryza sativa
LOC_Os08g05490 2.0kb downstream 2.0kb downstream 2000 false Chr8: 2928514-2930513 Oryza sativa
LOC_Os08g05490 5.0kb upstream 5.0kb upstream 9321 true Chr8: 2919193-2928513 Oryza sativa
LOC_Os08g05490 5.0kb upstream 5.0kb upstream 5000 false Chr8: 2919193-2924192 Oryza sativa
LOC_Os08g05490 5.0kb downstream 5.0kb downstream 9321 true Chr8: 2924193-2933513 Oryza sativa
LOC_Os08g05490 5.0kb downstream 5.0kb downstream 5000 false Chr8: 2928514-2933513 Oryza sativa
LOC_Os08g05490 10.0kb upstream 10.0kb upstream 14321 true Chr8: 2914193-2928513 Oryza sativa
LOC_Os08g05490 10.0kb upstream 10.0kb upstream 10000 false Chr8: 2914193-2924192 Oryza sativa
LOC_Os08g05490 10.0kb downstream 10.0kb downstream 14321 true Chr8: 2924193-2938513 Oryza sativa
LOC_Os08g05490 10.0kb downstream 10.0kb downstream 10000 false Chr8: 2928514-2938513 Oryza sativa

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041140 5273 Angiosperm View MSA
124589437 5269 Grass View MSA
121344192 5274 Embryophyte View MSA
123424631 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain