Protein Domain : IPR005706

Type:  Family Name:  Ribosomal protein S2, bacteria/mitochondria/plastid
Description:  Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ].This family describes the bacterial, archaea, mitochondrial and chloroplast forms of ribosomal protein S2. Short Name:  Ribosomal_S2_bac/mit/plastid

0 Child Features

1 Contains

DB identifier Type Name
IPR018130 Conserved_site Ribosomal protein S2, conserved site

3 Cross Referencess

Identifier
PTHR12534
TIGR01011
MF_00291_B

0 Found In

3 GO Annotations

GO Term Gene Name
GO:0003735 IPR005706
GO:0006412 IPR005706
GO:0015935 IPR005706

3 Ontology Annotations

GO Term Gene Name
GO:0003735 IPR005706
GO:0006412 IPR005706
GO:0015935 IPR005706

1 Parent Features

DB identifier Type Name
IPR001865 Family Ribosomal protein S2

758 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
137779 D8TE70 PAC:15422284 Selaginella moellendorffii 228  
evm.model.supercontig_73.32 PAC:16425610 Carica papaya 218  
29813.m001454 B9S8T3 PAC:16809414 Ricinus communis 110  
29852.m001988 B9RL05 PAC:16811550 Ricinus communis 317  
29923.m000786 B9SD12 PAC:16813642 Ricinus communis 360  
30189.m001656 B9RL72 PAC:16823110 Ricinus communis 114  
29174.m000010 B9T8I6 PAC:16802426 Ricinus communis 384  
ATCG00160.1 P56797 PAC:19637981 Arabidopsis thaliana 236  
AT3G03600.1 Q0WU50 PAC:19663726 Arabidopsis thaliana 219  
Thhalv10021487m V4LGU2 PAC:20182775 Eutrema salsugineum 219  
Thhalv10023738m V4KF11 PAC:20201494 Eutrema salsugineum 153  
Lus10013628 PAC:23171610 Linum usitatissimum 206  
Potri.019G028700.1 A0A2K1WNK7 PAC:27026711 Populus trichocarpa 206  
Potri.013G070000.1 PAC:26993715 Populus trichocarpa 394  
Potri.013G142600.1 PAC:26993569 Populus trichocarpa 165  
Gorai.002G152000.1 A0A0D2NFL7 PAC:26793327 Gossypium raimondii 110  
Gorai.003G045700.1 A0A0D2QKG4 PAC:26797806 Gossypium raimondii 146  
Gorai.004G082700.1 A0A0D2MVF9 PAC:26771708 Gossypium raimondii 79  
Gorai.004G222900.1 A0A0D2R902 PAC:26772629 Gossypium raimondii 94  
Gorai.013G017800.1 A0A0D2S6L9 PAC:26790838 Gossypium raimondii 425  
Gorai.009G328500.1 A0A0D2UXG5 PAC:26764391 Gossypium raimondii 133  
Gorai.005G227600.1 A0A0D2PXZ5 PAC:26806633 Gossypium raimondii 86  
Gorai.006G086500.1 A0A0D2NNT6 PAC:26830301 Gossypium raimondii 75  
Gorai.007G076100.1 A0A0D2TAT1 PAC:26781554 Gossypium raimondii 135  
Thecc1EG046378t1 PAC:27459573 Theobroma cacao 236  
Migut.D01338.1.p PAC:28927418 Mimulus guttatus 236  
Migut.D01413.1.p PAC:28928103 Mimulus guttatus 129  
Migut.C00361.1.p PAC:28944574 Mimulus guttatus 77  
Araha.4673s0005.1.p PAC:28843971 Arabidopsis halleri 219  
Araha.11756s0433.1.p PAC:28856557 Arabidopsis halleri 239  

3 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11297922
            11290319
            11114498