Protein Domain : IPR005713

Type:  Family Name:  Ribosomal protein S19A/S15e
Description:  Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ].This family represents eukaryotic ribosomal protein S15 and its archaeal equivalent. It excludes bacterial and organellar ribosomal protein S19. The nomenclature for the archaeal members is unresolved and given variously as S19 (after the more distant bacterial homologues) or S15. Short Name:  Ribosomal_S19A/S15e

0 Child Features

1 Contains

DB identifier Type Name
IPR020934 Conserved_site Ribosomal protein S19 conserved site

1 Cross References

Identifier
TIGR01025

0 Found In

3 GO Annotations

GO Term Gene Name
GO:0003735 IPR005713
GO:0006412 IPR005713
GO:0015935 IPR005713

3 Ontology Annotations

GO Term Gene Name
GO:0003735 IPR005713
GO:0006412 IPR005713
GO:0015935 IPR005713

1 Parent Features

DB identifier Type Name
IPR002222 Family Ribosomal protein S19/S15

996 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
172403 D8RLJ5 PAC:15411821 Selaginella moellendorffii 152  
evm.model.supercontig_52.144 PAC:16422003 Carica papaya 118  
evm.model.supercontig_58.46 PAC:16423018 Carica papaya 187  
29844.m003166 B9RTE6 PAC:16810874 Ricinus communis 151  
29883.m002009 B9S4T9 PAC:16812096 Ricinus communis 152  
Cucsa.383840.1 A0A0A0LLK6 PAC:16982445 Cucumis sativus 153  
Cucsa.254920.1 PAC:16972319 Cucumis sativus 154  
Cucsa.254920.3 PAC:16972321 Cucumis sativus 118  
Cucsa.254920.2 A0A0A0LA13 PAC:16972320 Cucumis sativus 123  
orange1.1g031659m A0A067FQR2 PAC:18093291 Citrus sinensis 155  
orange1.1g033505m A0A067FZ65 PAC:18093292 Citrus sinensis 118  
orange1.1g034541m A0A067FYH8 PAC:18093293 Citrus sinensis 92  
orange1.1g031653m PAC:18108842 Citrus sinensis 155  
AT5G09510.2 A8MQ96 PAC:19668939 Arabidopsis thaliana 118  
AT5G09490.1 Q9FY66 PAC:19669159 Arabidopsis thaliana 152  
AT5G09500.1 Q9FY65 PAC:19665441 Arabidopsis thaliana 150  
AT5G09510.1 Q9FY64 PAC:19668938 Arabidopsis thaliana 152  
AT5G43640.1 Q9FIX6 PAC:19669782 Arabidopsis thaliana 149  
AT5G63070.1 Q9FML6 PAC:19666511 Arabidopsis thaliana 160  
AT1G04270.2 F4I472 PAC:19658296 Arabidopsis thaliana 151  
AT1G04270.1 Q08112 PAC:19658295 Arabidopsis thaliana 152  
Thhalv10003334m V4LLQ4 PAC:20208136 Eutrema salsugineum 161  
Thhalv10014917m V4LB34 PAC:20204809 Eutrema salsugineum 152  
Thhalv10015045m V4LEN9 PAC:20204090 Eutrema salsugineum 118  
Thhalv10014919m V4LM21 PAC:20204089 Eutrema salsugineum 152  
Thhalv10009006m V4KFI1 PAC:20186862 Eutrema salsugineum 152  
Ciclev10022652m V4TA42 PAC:20810486 Citrus clementina 155  
Ciclev10022914m V4TUJ2 PAC:20810487 Citrus clementina 118  
Ciclev10006127m V4RZM7 PAC:20792186 Citrus clementina 155  
Lus10007469 PAC:23176517 Linum usitatissimum 154  

3 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11297922
            11290319
            11114498