Protein Domain : IPR001210

Type:  Family Name:  Ribosomal protein S17e
Description:  Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ].A number of eukaryotic and archaebacterial ribosomal proteins can be grouped in this family of ribosomal proteins, S17e. They include, vertebrate, Drosophila andNeurospora crassa(crp-3) S17's as well as yeast S17a (RP51A) and S17b (RP51B) and archaebacterial S17e [, , ]. Short Name:  Ribosomal_S17e

0 Child Features

1 Contains

DB identifier Type Name
IPR018273 Conserved_site Ribosomal protein S17e, conserved site

5 Cross Referencess

Identifier
PTHR10732
PF00833
G3DSA:1.10.60.20
SSF116820
MF_00511

0 Found In

4 GO Annotations

GO Term Gene Name
GO:0003735 IPR001210
GO:0006412 IPR001210
GO:0005622 IPR001210
GO:0005840 IPR001210

4 Ontology Annotations

GO Term Gene Name
GO:0003735 IPR001210
GO:0006412 IPR001210
GO:0005622 IPR001210
GO:0005840 IPR001210

0 Parent Features

900 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
270936 D8RLW3 PAC:15401752 Selaginella moellendorffii 146  
78322 D8QW09 PAC:15420718 Selaginella moellendorffii 101  
evm.model.supercontig_104.73 PAC:16405082 Carica papaya 143  
evm.model.supercontig_12.223 PAC:16406774 Carica papaya 143  
29612.m000376 B9SLP3 PAC:16803683 Ricinus communis 144  
28324.m000411 B9SW00 PAC:16800621 Ricinus communis 144  
28629.m000568 B9SWH2 PAC:16801323 Ricinus communis 143  
Cucsa.364550.1 A0A0A0KB47 PAC:16981274 Cucumis sativus 141  
Cucsa.364550.2 A0A0A0KB47 PAC:16981275 Cucumis sativus 141  
Cucsa.364550.3 A0A0A0KB47 PAC:16981276 Cucumis sativus 141  
Cucsa.241540.1 PAC:16971039 Cucumis sativus 141  
orange1.1g039014m A0A067DHC4 PAC:18133432 Citrus sinensis 139  
orange1.1g032415m A0A067FWM5 PAC:18118059 Citrus sinensis 141  
AT5G04800.2 Q9LZ17 PAC:19672587 Arabidopsis thaliana 141  
AT5G04800.3 Q9LZ17 PAC:19672588 Arabidopsis thaliana 141  
AT5G04800.4 Q9LZ17 PAC:19672589 Arabidopsis thaliana 141  
AT5G04800.1 Q9LZ17 PAC:19672586 Arabidopsis thaliana 141  
AT3G10610.1 Q9SQZ1 PAC:19664328 Arabidopsis thaliana 140  
AT2G05220.1 Q9SJ36 PAC:19640919 Arabidopsis thaliana 140  
AT2G05220.2 Q9SJ36 PAC:19640920 Arabidopsis thaliana 140  
AT2G04390.1 P49205 PAC:19640402 Arabidopsis thaliana 141  
Thhalv10021735m PAC:20183887 Eutrema salsugineum 138  
Thhalv10021730m PAC:20183888 Eutrema salsugineum 138  
Thhalv10021736m PAC:20181528 Eutrema salsugineum 138  
Thhalv10021731m PAC:20181527 Eutrema salsugineum 138  
Thhalv10014973m V4N536 PAC:20203562 Eutrema salsugineum 139  
Thhalv10003052m V4MWW3 PAC:20196457 Eutrema salsugineum 127  
Ciclev10013058m V4SWD9 PAC:20798796 Citrus clementina 141  
Ciclev10017116m V4TZG1 PAC:20817619 Citrus clementina 139  
Ciclev10017115m V4TZG1 PAC:20817618 Citrus clementina 139  

6 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11297922
            11290319
            11114498
            3240863
            2507396
            6092944