Protein Domain : IPR008258

Type:  Domain Name:  Transglycosylase SLT domain 1
Description:  This domain is found mainly in proteins from phages and type II, type III and type IV secretion systems [, , , ].Bacterial lytic transglycosylases degrade murein via cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine, with the concomitant formation of a 1,6-anhydrobond in the muramic acid residue. There are both soluble (Slt enzymes) and membrane-bound (Mlt enzymes) lytic transglycosylases that differ in size, sequence, activity, specificity and location. The multi-domain structure of the 70 Kd soluble lytic transglycosylase Slt70 is known []. Slt70 has 3 distinct domains, each rich in alpha helices: an N-terminal superhelical U-shaped domain (U-domain; ), a superhelical linker domain (L-domain, ), and a C-terminal catalytic domain (). Both the U- and L-domain share a similar superhelical structure. These two domains are connected, and together form a closed ring with a large central hole; the catalytic domain is packed on top of, and interacts with, this ring. The catalytic domain has a lysosome-like fold. Short Name:  Transglycosylase_SLT_dom_1

0 Child Features

1 Contains

DB identifier Type Name
IPR000189 Active_site Prokaryotic transglycosylase, active site

1 Cross References

Identifier
PF01464

1 Found In

DB identifier Type Name
IPR002152 Family Glycoside hydrolase, family 23

0 GO Annotation

0 Ontology Annotations

1 Parent Features

DB identifier Type Name
IPR023346 Domain Lysozyme-like domain

646 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
441741 D8RLF4 PAC:15410217 Selaginella moellendorffii 500  
443508 D8S1V4 PAC:15414494 Selaginella moellendorffii 903  
113854 D8SCY9 PAC:15419335 Selaginella moellendorffii 401  
30169.m006271 B9RHW0 PAC:16821074 Ricinus communis 429  
30333.m000034 B9TG04 PAC:16824349 Ricinus communis 133  
30692.m000027 B9TEG0 PAC:16824555 Ricinus communis 277  
33357.m000019 PAC:16825790 Ricinus communis 254  
44338.m000013 B9TQW2 PAC:16827683 Ricinus communis 96  
47669.m000014 B9TL20 PAC:16828011 Ricinus communis 273  
53704.m000024 B9TKQ4 PAC:16828639 Ricinus communis 143  
28599.m000063 B9T9E3 PAC:16801197 Ricinus communis 291  
Cucsa.239870.1 A0A0A0K3L0 PAC:16970829 Cucumis sativus 423  
orange1.1g014423m A0A067FDN4 PAC:18133572 Citrus sinensis 425  
AT1G16290.1 A1L4W6 PAC:19650257 Arabidopsis thaliana 419  
Thhalv10007775m V4KBV3 PAC:20186568 Eutrema salsugineum 410  
Ciclev10006846m V4SET2 PAC:20789479 Citrus clementina 418  
Lus10036958 PAC:23171308 Linum usitatissimum 509  
Lus10037104 PAC:23152393 Linum usitatissimum 427  
Potri.008G084100.3 PAC:27036394 Populus trichocarpa 326  
Potri.008G084100.2 A0A2K1ZDY7 PAC:27036393 Populus trichocarpa 424  
Potri.008G084100.1 A0A2K1ZDY7 PAC:27036392 Populus trichocarpa 424  
Potri.010G172300.1 PAC:26980434 Populus trichocarpa 455  
Potri.010G172300.2 A0A3N7FNC6 PAC:26980435 Populus trichocarpa 434  
Gorai.002G109700.2 A0A0D2R401 PAC:26795302 Gossypium raimondii 404  
Gorai.002G109700.1 A0A0D2Q400 PAC:26795301 Gossypium raimondii 421  
Gorai.013G145200.2 A0A0D2U1E0 PAC:26787911 Gossypium raimondii 421  
Gorai.013G145200.1 A0A0D2VFE0 PAC:26787910 Gossypium raimondii 429  
Thecc1EG033480t1 A0A061FBY4 PAC:27445908 Theobroma cacao 426  
Migut.M01519.1.p A0A022QM75 PAC:28950167 Mimulus guttatus 425  
Araha.1918s0010.1.p PAC:28845512 Arabidopsis halleri 430  

4 Publications

First Author Title Year Journal Volume Pages PubMed ID
            8203016
            8692991
            10452894
            14625683