Protein Domain : IPR001380

Type:  Family Name:  Ribosomal protein L13e
Description:  Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ].The ribosomal protein L13e is widely found in vertebrates [], Drosophila melanogaster, plants, yeast, amongst others. Short Name:  Ribosomal_L13e

1 Child Features

DB identifier Type Name
IPR023004 Family Ribosomal protein L13e, archaea

1 Contains

DB identifier Type Name
IPR018256 Conserved_site Ribosomal protein L13e, conserved site

2 Cross Referencess

Identifier
PTHR11722
PF01294

0 Found In

4 GO Annotations

GO Term Gene Name
GO:0003735 IPR001380
GO:0006412 IPR001380
GO:0005622 IPR001380
GO:0005840 IPR001380

4 Ontology Annotations

GO Term Gene Name
GO:0003735 IPR001380
GO:0006412 IPR001380
GO:0005622 IPR001380
GO:0005840 IPR001380

0 Parent Features

956 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
165483 D8QUV0 PAC:15413581 Selaginella moellendorffii 208  
266648 D8QUC7 PAC:15409863 Selaginella moellendorffii 208  
evm.model.supercontig_113.54 PAC:16406066 Carica papaya 207  
evm.model.supercontig_32.49 PAC:16417428 Carica papaya 192  
evm.model.supercontig_32.51 PAC:16417431 Carica papaya 207  
30071.m000428 B9STE6 PAC:16816693 Ricinus communis 207  
30073.m002217 B9S1X7 PAC:16816803 Ricinus communis 207  
Cucsa.093890.1 A0A0A0KU76 PAC:16957664 Cucumis sativus 206  
Cucsa.093890.2 A0A0A0KU76 PAC:16957665 Cucumis sativus 206  
Cucsa.129120.3 PAC:16962236 Cucumis sativus 161  
Cucsa.129120.1 A0A0A0KKX2 PAC:16962234 Cucumis sativus 206  
Cucsa.129120.2 A0A0A0KKX2 PAC:16962235 Cucumis sativus 206  
orange1.1g028624m A0A067DZD4 PAC:18107114 Citrus sinensis 206  
orange1.1g041207m A0A067EKE4 PAC:18122471 Citrus sinensis 126  
AT5G23900.1 Q9FF90 PAC:19668301 Arabidopsis thaliana 206  
AT3G49010.3 P41127 PAC:19664508 Arabidopsis thaliana 206  
AT3G49010.2 P41127 PAC:19664507 Arabidopsis thaliana 206  
AT3G48960.1 Q9SMT4 PAC:19661368 Arabidopsis thaliana 206  
AT3G49010.4 A8MQA1 PAC:19664509 Arabidopsis thaliana 204  
AT3G49010.5 F4IWP7 PAC:19664510 Arabidopsis thaliana 153  
AT3G49010.1 P41127 PAC:19664506 Arabidopsis thaliana 206  
Thhalv10010724m V4M0D9 PAC:20206745 Eutrema salsugineum 206  
Thhalv10010728m V4LT30 PAC:20206746 Eutrema salsugineum 204  
Thhalv10004920m V4MKI2 PAC:20199157 Eutrema salsugineum 206  
Thhalv10004928m V4MKI2 PAC:20199158 Eutrema salsugineum 206  
Thhalv10004926m V4MKI2 PAC:20199159 Eutrema salsugineum 206  
Ciclev10022283m V4TYP5 PAC:20810800 Citrus clementina 206  
Ciclev10009507m V4UL33 PAC:20792788 Citrus clementina 206  
Lus10013719 PAC:23169097 Linum usitatissimum 206  
Lus10009578 PAC:23145691 Linum usitatissimum 206  

4 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11297922
            11290319
            11114498
            8198561