Protein Domain : IPR027521

Type:  Family Name:  U6 snRNA phosphodiesterase Usb1
Description:  Proteins in this family are phosphodiesterases responsible for trimming the poly (U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA [].In Saccharomyces cerevisiae, Usb1 is an essential protein that localises to the nucleus and mitochondria []. Usb1 overexpression can compensate for specific respiratory defects of an oxa1 yeast mutant []. In humans, Usb1 is localised to the nucleus and is involved in the 2',3'-cyclic phosphate formation at the 3' end of U6 snRNA []. The human protein has been shown to degrade both oligo(U) and oligo(A) tails at the 3' end of U6 snRNA []. Its crystal structure has been solved and shows a globular alpha-beta-type architecture []. Mutation in Usb1 is linked to poikiloderma with neutropenia (PN), a genodermatosis characterised by poikiloderma, pachyonychia and chronic neutropenia [, ]. Short Name:  Usb1

0 Child Features

0 Contains

3 Cross Referencess

Identifier
PTHR13522
PF09749
MF_03040

0 Found In

2 GO Annotations

GO Term Gene Name
GO:0004518 IPR027521
GO:0034477 IPR027521

2 Ontology Annotations

GO Term Gene Name
GO:0004518 IPR027521
GO:0034477 IPR027521

0 Parent Features

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
414038 D8RRF5 PAC:15414382 Selaginella moellendorffii 303  
evm.model.supercontig_13.231 PAC:16407749 Carica papaya 291  
30147.m014351 B9RA08 PAC:16820362 Ricinus communis 288  
Cucsa.129190.1 PAC:16962250 Cucumis sativus 289  
orange1.1g040757m A0A067DPC2 PAC:18110664 Citrus sinensis 295  
AT5G51170.2 A8MS62 PAC:19668650 Arabidopsis thaliana 238  
AT5G51170.1 Q9LU57 PAC:19668649 Arabidopsis thaliana 285  
Thhalv10014247m V4LI85 PAC:20204022 Eutrema salsugineum 294  
Ciclev10032148m V4SR72 PAC:20804117 Citrus clementina 318  
Lus10031950 PAC:23161209 Linum usitatissimum 291  
Lus10035151 PAC:23162363 Linum usitatissimum 561  
Potri.T136200.1 A0A2K1R5J6 PAC:27014114 Populus trichocarpa 290  
Potri.015G111600.1 A0A2K1XLG3 PAC:27017795 Populus trichocarpa 290  
Gorai.001G052100.1 A0A0D2PM21 PAC:26821026 Gossypium raimondii 290  
Gorai.013G121700.1 A0A0D2VE50 PAC:26790062 Gossypium raimondii 258  
Gorai.013G121700.2 A0A0D2W5A4 PAC:26790063 Gossypium raimondii 164  
Gorai.005G129900.1 A0A0D2RKK4 PAC:26805131 Gossypium raimondii 297  
Gorai.006G046400.2 A0A0D2NLY1 PAC:26832314 Gossypium raimondii 138  
Gorai.006G046400.1 A0A0D2RX77 PAC:26832313 Gossypium raimondii 194  
Gorai.007G289400.1 A0A0D2PGE3 PAC:26784030 Gossypium raimondii 297  
45724 I0Z8V7 PAC:27389512 Coccomyxa subellipsoidea C-169 202  
183820 C1MJ49 PAC:27345345 Micromonas pusilla CCMP1545 313  
56454 C1DZQ7 PAC:27396438 Micromonas sp RCC299 315  
92456 A4RUL8 PAC:27413246 Ostreococcus lucimarinus 210  
Thecc1EG014814t1 A0A061G0M6 PAC:27448913 Theobroma cacao 345  
Migut.F00541.1.p A0A022Q0X4 PAC:28933747 Mimulus guttatus 288  
Araha.17618s0003.1.p PAC:28846412 Arabidopsis halleri 291  
Cagra.5476s0010.1.p PAC:28915986 Capsella grandiflora 293  
Glyma.01G079300.4.p I1J6I2 PAC:30545033 Glycine max 279  
Glyma.01G079300.1.p I1J6I2 PAC:30545034 Glycine max 279  

6 Publications

First Author Title Year Journal Volume Pages PubMed ID
            14562095
            22899009
            23190533
            20004881
            20503306
            22027258