Protein Domain : IPR007148

Type:  Domain Name:  Small-subunit processome, Utp12
Description:  A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar.They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis.There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 . They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae(Baker's yeast) protein involved in cell separation. Short Name:  SSU_processome_Utp12

0 Child Features

0 Contains

1 Cross References

Identifier
PF04003

0 Found In

0 GO Annotation

0 Ontology Annotations

0 Parent Features

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
99969 D8RRT6 PAC:15420450 Selaginella moellendorffii 911  
80929 D8R0D2 PAC:15409141 Selaginella moellendorffii 887  
evm.model.supercontig_10.221 PAC:16404584 Carica papaya 889  
evm.model.supercontig_336.4 PAC:16417797 Carica papaya 628  
evm.model.supercontig_5.157 PAC:16421259 Carica papaya 942  
evm.model.supercontig_9.113 PAC:16427995 Carica papaya 719  
29726.m004107 B9RTB5 PAC:16806817 Ricinus communis 586  
29841.m002801 B9RV10 PAC:16810514 Ricinus communis 895  
29841.m002805 B9RV14 PAC:16810518 Ricinus communis 634  
30078.m002247 B9S0D0 PAC:16817358 Ricinus communis 950  
Cucsa.096610.1 A0A0A0KTC0 PAC:16958051 Cucumis sativus 892  
Cucsa.096610.2 PAC:16958052 Cucumis sativus 836  
Cucsa.105220.1 A0A0A0KBW9 PAC:16959306 Cucumis sativus 624  
Cucsa.124840.1 PAC:16961780 Cucumis sativus 941  
Cucsa.124840.2 PAC:16961781 Cucumis sativus 871  
Cucsa.069380.1 A0A0A0KF10 PAC:16955440 Cucumis sativus 629  
orange1.1g006808m PAC:18109474 Citrus sinensis 630  
orange1.1g007234m PAC:18109475 Citrus sinensis 612  
orange1.1g008041m PAC:18109476 Citrus sinensis 579  
orange1.1g008058m PAC:18109477 Citrus sinensis 579  
orange1.1g038577m A0A067ECH0 PAC:18097660 Citrus sinensis 860  
orange1.1g004687m PAC:18120679 Citrus sinensis 737  
AT5G11240.1 B5X503 PAC:19668029 Arabidopsis thaliana 615  
AT3G21540.1 Q9LVF2 PAC:19665142 Arabidopsis thaliana 955  
AT1G15440.2 Q8VYZ5 PAC:19651749 Arabidopsis thaliana 860  
AT1G15440.1 Q8VYZ5 PAC:19651748 Arabidopsis thaliana 900  
AT1G15420.1 Q8L403 PAC:19654124 Arabidopsis thaliana 278  
Thhalv10024329m V4MKE8 PAC:20195134 Eutrema salsugineum 955  
Thhalv10012983m V4LFB5 PAC:20203616 Eutrema salsugineum 616  
Thhalv10006752m V4KYZ3 PAC:20185787 Eutrema salsugineum 897  

3 Publications

First Author Title Year Journal Volume Pages PubMed ID
            12068309
            15590835
            15489292