Protein Domain : IPR022023

Type:  Domain Name:  U1 small nuclear ribonucleoprotein of 70kDa N-terminal
Description:  This domain is about 90 amino acids in length and is found at the N terminus of U1 small nuclear ribonucleoprotein 70 kDa (U1-70K), which is part of the U1 snRNP (snRNP) complex. U1 snRNP recognises the 5' splice site within precursor messenger RNAs and initiate the assembly of the spliceosome for intron excision.The N-terminal region of U1-70K extends over a distance of 180 A from its RNA binding domain, wraps around the core domain of U1 snRNP consisting of the seven Sm proteins and finally contacts U1-C, which is crucial for 5'-splice-site recognition []. Short Name:  U1snRNP70_N

0 Child Features

0 Contains

1 Cross References

Identifier
PF12220

0 Found In

0 GO Annotation

0 Ontology Annotations

0 Parent Features

546 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
102480 D8RV72 PAC:15406175 Selaginella moellendorffii 137  
58751 D8SCM6 PAC:15409480 Selaginella moellendorffii 156  
evm.model.supercontig_337.7 PAC:16417816 Carica papaya 172  
29983.m003313 B9RWB5 PAC:16815078 Ricinus communis 216  
29634.m002163 B9S6I9 PAC:16804304 Ricinus communis 506  
Cucsa.127380.1 A0A0A0KGZ1 PAC:16962036 Cucumis sativus 505  
orange1.1g010771m A0A067GIG1 PAC:18124912 Citrus sinensis 501  
orange1.1g011668m A0A067GIN6 PAC:18124913 Citrus sinensis 480  
orange1.1g011980m A0A067GLG1 PAC:18124914 Citrus sinensis 473  
AT3G50670.2 Q42404 PAC:19658569 Arabidopsis thaliana 204  
AT3G50670.1 Q42404 PAC:19658568 Arabidopsis thaliana 427  
Thhalv10010375m V4NGZ0 PAC:20207445 Eutrema salsugineum 446  
Thhalv10004249m V4K004 PAC:20199579 Eutrema salsugineum 434  
Ciclev10025502m V4SPA8 PAC:20800612 Citrus clementina 480  
Ciclev10025506m V4SJA7 PAC:20800613 Citrus clementina 478  
Lus10014317 PAC:23164747 Linum usitatissimum 466  
Lus10026026 PAC:23173184 Linum usitatissimum 472  
Potri.005G124300.1 U5GC46 PAC:27029302 Populus trichocarpa 481  
Potri.007G026900.1 B9HEV8 PAC:27016077 Populus trichocarpa 497  
Gorai.011G101900.1 A0A0D2RK37 PAC:26806833 Gossypium raimondii 471  
Gorai.011G101900.2 A0A0D2US14 PAC:26806834 Gossypium raimondii 404  
61728 I0Z4F3 PAC:27389684 Coccomyxa subellipsoidea C-169 443  
56455 C1MMA5 PAC:27347426 Micromonas pusilla CCMP1545 472  
58651 C1E6F8 PAC:27395551 Micromonas sp RCC299 465  
7191 A4RXM0 PAC:27416661 Ostreococcus lucimarinus 217  
Thecc1EG000407t1 A0A061DH94 PAC:27436227 Theobroma cacao 468  
Migut.H01001.2.p PAC:28952587 Mimulus guttatus 467  
Migut.H01001.1.p A0A022RIY3 PAC:28952586 Mimulus guttatus 479  
Araha.17825s0006.1.p PAC:28860710 Arabidopsis halleri 300  
Cagra.0926s0028.1.p PAC:28911336 Capsella grandiflora 429  

1 Publications

First Author Title Year Journal Volume Pages PubMed ID
            19325628