Protein Domain : IPR005998

Type:  Family Name:  Ribosomal protein L7, eukaryotic
Description:  Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ].Eukaryotic ribosomal protein, L7, contains an N-terminal bZIP DNA binding domain and a second, DNA-binding domain has been mapped to the 50 C-terminal amino acids of the protein []. In addition to its role in translation, L7 has also been shown to be involved in nuclear-receptor mediated transcriptional control. There is no bacterial homologue of this protein. Short Name:  Ribosomal_L7_euk

0 Child Features

3 Contains

DB identifier Type Name
IPR016082 Domain Ribosomal protein L30, ferredoxin-like fold domain
IPR012988 Domain Ribosomal protein L30, N-terminal
IPR018038 Conserved_site Ribosomal protein L30, conserved site

1 Cross References

Identifier
TIGR01310

0 Found In

0 GO Annotation

0 Ontology Annotations

0 Parent Features

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
103994 D8RWP2 PAC:15413047 Selaginella moellendorffii 245  
evm.model.supercontig_21.235 PAC:16413520 Carica papaya 242  
evm.model.supercontig_72.55 PAC:16425557 Carica papaya 889  
29822.m003520 B9RUS1 PAC:16809888 Ricinus communis 243  
30060.m000529 B9SDR8 PAC:16816319 Ricinus communis 243  
29588.m000863 B9SMU2 PAC:16803237 Ricinus communis 247  
Cucsa.149550.1 PAC:16964287 Cucumis sativus 243  
Cucsa.149550.2 PAC:16964288 Cucumis sativus 243  
Cucsa.255430.1 A0A0A0L528 PAC:16972395 Cucumis sativus 246  
Cucsa.359600.1 A0A0A0KCA3 PAC:16980607 Cucumis sativus 243  
Cucsa.359600.2 A0A0A0KCA3 PAC:16980608 Cucumis sativus 243  
orange1.1g026027m A0A067DQV3 PAC:18113730 Citrus sinensis 244  
orange1.1g026055m A0A067DQV3 PAC:18113731 Citrus sinensis 244  
orange1.1g025547m A0A067DGX7 PAC:18122310 Citrus sinensis 251  
orange1.1g026136m A0A067F3J5 PAC:18105457 Citrus sinensis 243  
orange1.1g026093m A0A067F3J5 PAC:18105458 Citrus sinensis 243  
orange1.1g025560m A0A067DVD6 PAC:18138466 Citrus sinensis 251  
AT3G13580.2 Q9LHP1 PAC:19661126 Arabidopsis thaliana 244  
AT3G13580.1 Q9LHP1 PAC:19661125 Arabidopsis thaliana 244  
AT3G13580.3 Q9LHP1 PAC:19661127 Arabidopsis thaliana 244  
AT1G80750.1 Q0WU42 PAC:19657428 Arabidopsis thaliana 247  
AT2G01250.1 P60040 PAC:19640255 Arabidopsis thaliana 242  
AT2G44120.2 F4IT48 PAC:19638371 Arabidopsis thaliana 247  
AT2G44120.1 P60039 PAC:19638372 Arabidopsis thaliana 242  
Thhalv10021411m V4M8F4 PAC:20182415 Eutrema salsugineum 244  
Thhalv10001008m V4LJH2 PAC:20202737 Eutrema salsugineum 242  
Thhalv10001608m V4KMD9 PAC:20188854 Eutrema salsugineum 242  
Thhalv10001606m V4KMD9 PAC:20188853 Eutrema salsugineum 242  
Thhalv10019044m V4KBL2 PAC:20191435 Eutrema salsugineum 248  
Ciclev10026360m V4SUY5 PAC:20800032 Citrus clementina 244  

4 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11297922
            11290319
            11114498
            10329420